Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2657 179 5e-40 seq3051 122 1e-22 >seq2657 Length=10989 Score = 179 bits (198), Expect = 5e-40 Identities = 477/720 (66%), Gaps = 14/720 (2%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| || || |||||| |||||||||| ||||| | || ||||| | | | Sbjct 3165 TCGAACTCATCGCCGTAAACATCTGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTC 3224 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || || |||| | || || || ||||| |||||||| |||||||| ||||| ||| || Sbjct 3225 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGC-ATAGAA 3283 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | || | || | |||||| || || ||||| | | || |||||| | | Sbjct 3284 CAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGTCCAGGAACTCAAA 3343 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || || Sbjct 3344 GACATCCGCGTGCCATGGCTCAACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACC 3403 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 || || | ||| || |||||||| || | || | | ||| || | ||| ||||| || Sbjct 3404 TTGGTCAACGTACCTTGCGGTGTTGTTGAACACGCGGAGCATAGGGACAATGCCGTTCGA 3463 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA---TTACTAATTGATAG 63493 | || |||||||||| || || ||| ||||||| ||| | || | || Sbjct 3464 GTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGGATATTCAAT-- 3521 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || || || | || ||||| | || || || | |||||||||||||| Sbjct 3522 -CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTGTCATAGATACC 3580 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| || ||||| || |||||| | | || ||| || | ||| | || Sbjct 3581 CTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGACGAAAGCTGGGCCTGTGGTGT 3640 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || ||||| || | || || |||||||| || || |||| ||| | || ||||| Sbjct 3641 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 3700 Query 63674 CGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACA 63732 ||||| || | || |||||| || | ||||| || || || |||||||| | || Sbjct 3701 TGTCTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACCGCAACACGCATAATCA 3759 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 ||||||| || || ||| | | |||| | | | | | ||||||| |||| | Sbjct 3760 TGTGCTGTGGCCTCTCAGCAACCTTGCCATCAAGTCGGAGAAGGTAGGATCGCTCCAGGG 3819 Query 63793 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 | || || || || || | ||| ||||| || || ||||| | | | | |||||||| Sbjct 3820 TCTTGAAGCCGAAGTATTGGTAGTTGAAA--TCACGGTCGTAGAGGACAGCAGAGTTGAG 3877 >seq3051 Length=56537 Score = 122 bits (134), Expect = 1e-22 Identities = 362/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| |||||||| || | || || ||||| || || || || Sbjct 43103 CAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 43044 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || | ||| ||||||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 43043 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 42984 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || ||||| ||||||| || | || || | | | | || || Sbjct 42983 ATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTATCTTGG 42924 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||| | ||||| ||||||||||| || | ||||| || || || |||||||| Sbjct 42923 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTG 42864 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| || | || | || || | || || ||||| | || || | Sbjct 42863 AAGAGGTATGTCCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTC 42804 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || | |||||||| || || || || || |||||||| || | || || | ||| Sbjct 42803 TCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCTTCTGGGATC 42744 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | | || || || | || || || || ||||||||| || || Sbjct 42743 TGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGACGCGGCG 42684 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAA 33777 || || || | ||||| || || || || || | | | || ||||| Sbjct 42683 AAGAAAGCGAGAACATGGGAGATGAAGTAGCGCTCATCATCATTGAGGCGATTGTTCCAG 42624 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || | | || || || | ||| | || || ||||||| || ||||| || ||||| Sbjct 42623 TCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAAGATGCTTCCGCCTTC 42564 Query 33838 TTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 42563 TTGTACATCTGCCAGAT 42547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922912846040