Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2289 125 2e-23 seq2358 109 1e-18 seq2629 100 7e-16 seq3051 93.3 1e-13 >seq2289 Length=32595 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| || || ||||| || ||||| | Sbjct 1190 CCACCACGGAGGCGGAGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 1249 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||| ||||| ||||| || |||| Sbjct 1250 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGG 1309 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || | || ||||| || || | ||| ||| || ||| Sbjct 1310 ATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACT 1369 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 1370 TCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1416 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || | |||| || || || || || || ||||||| | Sbjct 1646 CCACCGCGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAG 1705 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||| ||||| ||||| || || Sbjct 1706 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 1765 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| |||| ||||| || || || | ||| ||| || || Sbjct 1766 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACC 1825 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||||||||| |||||||| Sbjct 1826 TCCAAAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1872 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| |||||| || || ||||| || |||||| ||||| | || || || | || Sbjct 986 TGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTCGAGCTGC 1045 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| ||||| ||||| || |||||| || || |||||||| || || Sbjct 1046 TTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATCTTG 1105 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | || ||||| || || | || || || || ||||| || || ||||| |||||| Sbjct 1106 GACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTTTCCGGTC 1165 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||||||||||| |||||||| Sbjct 1166 AAGGTCTTGACGAAAATCTGCAT 1188 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | || ||||| || || || | || || || || ||| Sbjct 1454 TCCTTTTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAG 1513 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || || ||||| || || ||||| || |||| || ||||| Sbjct 1514 ATCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTCGACTTGACGTTA 1573 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || || ||||| |||||||| || || ||||||||||| Sbjct 1574 TCAATGGTATCAGATGATTCCACCTCAAGCGTAATCGTCTTTCCCGTAAGAGTCTTGACA 1633 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1634 AAAATCTGCAT 1644 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/173 (74%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| ||||| || | ||| || || |||||| Sbjct 1910 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAG 1969 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCAC 288398 |||||||| || || || ||| ||||| || || || ||||| || ||| || || Sbjct 1970 ATCAGACGTTGCTG---GTCCGGGGGAATTCCCTCCTTGTCTTGGATCTT-GCTCTTAAC 2025 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 ||| || || | |||| ||| || || || || ||||| ||||| || |||| Sbjct 2026 GTTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 2078 >seq2358 Length=47611 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| || || | |||| ||| || || ||||| || || || | Sbjct 17966 CCTCCACGAAGTCTCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 18025 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || || ||| Sbjct 18026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG---GTCCGGG 18082 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || |||||||| || | || || || || |||| |||| ||| || Sbjct 18083 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCC 18142 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 18143 ACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 18192 >seq2629 Length=50867 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || |||||||| || || | || || || || |||||| Sbjct 38007 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 38066 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| ||||| || || || ||||| |||| || || || Sbjct 38067 AGGCGCTGCTGG---TCCGGGGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTG 38123 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| |||| || || || || || ||||| ||||| || |||| ||||||||| Sbjct 38124 TCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACG 38183 Query 288463 AA 288464 || Sbjct 38184 AA 38185 >seq3051 Length=56537 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | ||| || | || ||| | || |||| ||||| ||| | | |||| Sbjct 43184 AAGAGTTCTTGACTGAGGCACTTCCCTGTGCGCTGCTCGGCATGAACGCCAACTTGATGA 43243 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGGCACTCGGTTATGAGAAAGTG 269235 | ||||| || || ||||| || || | | || | | | |||||| | ||||| Sbjct 43244 AGCAATACATTGAGTTCGTCGCCGACAGGCTGCTGCTCTCC-CTCGGTAACGAGAAGTAC 43302 Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 ||||| |||| || || |||| || ||||| || || || | ||||||||| ||| Sbjct 43303 TACAAGTCGACCAACCCATTCGATTTCATGGAGAACATCTCCCTGGCAGGAAAGACCAAC 43362 Query 269296 TTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 |||||||| ||||| ||| |||||| ||| ||||||| ||| Sbjct 43363 TTCTTCGAGAAGCGCGTCGCCGACTACCAAAAGACTGGTGTCATG 43407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179607258429682