Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2289 125 7e-24 seq2358 82.4 8e-11 >seq2289 Length=32595 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | | ||||||||||||||||||||||| | Sbjct 1418 CCACCACGAAGACGGAGAACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCCGAC 1477 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || ||||| | | |||| || ||||| ||||||||||| Sbjct 1478 AGAGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 1537 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | || | | || | ||| || | || ||||| Sbjct 1538 ATTCCCTCCTTGTC-CTGAATCTTCGACTTGACGTTATCAATGGTATCAGATGATTCCAC 1596 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | ||| || || || ||||| || |||||||||||||| Sbjct 1597 CTCAAGCGTAATCGTCTTTCCCGTAAGAGTCTTGACAAAAATCTGCAT 1644 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| || ||||||||| || || || | Sbjct 1679 GACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCG 1738 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||| ||||||||||| || || || ||||| ||| || || | | Sbjct 1739 AAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTCACA 1798 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||| ||||| | || | || || || || || || || Sbjct 1799 TTG-TCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCCGTGAGGGTCTT 1857 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1858 GACGAAGATCTGCAT 1872 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || | | |||||||| || || || | | Sbjct 997 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTGCCCGCGAA 1056 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || || ||||| |||||||| || ||||| || || || ||| | || | || | | Sbjct 1057 AATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATC-CTGAATCTTGGACTTGACGT 1115 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||| ||||||| || | || || || |||| || || Sbjct 1116 TG-TCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTTTCCGGTCAAGGTCTTG 1174 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1175 ACGAAAATCTGCAT 1188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 1874 CCACCGCGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1933 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| ||||| || |||| |||| ||||| || |||||||| || Sbjct 1934 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 1993 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || | || | |||| ||| || | ||| |||| |||||| | Sbjct 1994 ATTCCCTCCTTGTC-TTGGATCTTGCTCTTAACGTTG-TCGATGGTATCGGACGACTCGA 2051 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||| | || | || || ||||||| Sbjct 2052 CCTCAAGGGTGATGGTCTTGCCAGTCA 2078 >seq2358 Length=47611 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || | || || |||||||| || || |||| Sbjct 17999 GACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 18058 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 18059 AAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 18118 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | || |||| |||||||||||| | || | || || || ||||| || || Sbjct 18119 TTGT-CGATAGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTT 18177 Query 138600 TACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 18178 CACGAAGATTTGCATGACT 18196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496243051969680