Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3080 132 1e-25 seq3051 105 2e-17 seq2259 100 8e-16 seq2301 84.2 6e-11 >seq3080 Length=59079 Score = 132 bits (146), Expect = 1e-25 Identities = 226/328 (69%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || ||||| |||||| | ||| | ||||||| | ||||| | |||||| Sbjct 51506 TTCCTGACGGTTCCATCATACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACGT 51565 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||| ||||||||| | || || ||||| |||||||| ||||| |||||||| || Sbjct 51566 TGAATGTAACCAGTTTCGGCAGTCTTGACAGCGGTATCAATGAGACCCTCACGACCAGCC 51625 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || || |||||||| | ||| || || || | | | ||| ||||||| || Sbjct 51626 ATGGCGTGGAAGAAGAACTCAGATGGAGTGAGACCTCTCAGGTACGAGTTCTCAACAAAG 51685 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| | |||||| || | || ||| || || ||||||||||| | || || | Sbjct 51686 CCACGAGACTCGGGAGAGTAATCATCCTTTGTGAAATGTGGCAGGGTGCGGTACTTGAAT 51745 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 ||| | || |||||||| || ||||| ||||||||| | | | ||||||| || Sbjct 51746 CCGAAAGGAATACGCTTACCCTCAACAGACTGCTGTCCGACAAGGGCAGTCATCTGGGAG 51805 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||||| | | |||||||| |||| Sbjct 51806 ATATTGATAGTGGAACCCTTGGAACCAG 51833 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| ||| |||| ||||| ||| Sbjct 50759 AGAATTTCCTTTAGACGCGGCACACCAAGTGTGACGTT---CTTAGACGACACACCGGCA 50815 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | || |||| |||||||| ||| ||| || |||| Sbjct 50816 AAATGGAAAGTATTGAGCGTCATCTGCGTAGCAGGCTCACCGATAGATTGGGCGGCAAGA 50875 Query 301933 ATACCAACCATTTCTCCTGG 301952 ||||| ||||| || || || Sbjct 50876 ATACCGACCATCTCGCCGGG 50895 >seq3051 Length=56537 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || || ||||| | |||||||| ||| |||||||| || ||| | | | Sbjct 42881 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCAGTTAGGTGGATCCAAGATAAGGATTCTA 42940 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||||||||| || |||| || ||||| || || ||| || | | Sbjct 42941 CCTTTGCTCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCTCCGGCTCCT 43000 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||| ||||| ||||| || |||||||| | | |||| ||| || || |||| Sbjct 43001 TCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACG 43060 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || || | || |||| || |||||||| || ||| Sbjct 43061 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCC 43101 >seq2259 Length=28288 Score = 100 bits (110), Expect = 8e-16 Identities = 385/592 (65%), Gaps = 22/592 (4%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||||||||| | | || || || || ||| | ||||| || | || | || | Sbjct 7181 ATAAGACCACAGATGTCGCAAACGTGCACTCTGAACGCATCCGACACCTCGAACAGTCTC 7122 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | ||| ||||| |||||||| |||||||| ||||| || |||||| Sbjct 7121 TCCTTCAAGAACGCACTTGCGCCGTGGGAAATCATGCAATCACGTTCCATCTCTCCGAAA 7062 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || | |||||||| | || | |||||| ||||||| | || ||| | | || Sbjct 7061 CGCAATCCACCATCTCTGGCACGACCCTCCACAGGCTGCCTCGTCAGAATTTGAGTTGGT 7002 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| | | || ||| || | |||||||| | ||||||||||| ||| | Sbjct 7001 CCTCTGGCTCTGGCGTGGATCTTGTCGTCGACCATATGTCTCAGACGCTGGTAATATGTG 6942 Query 251647 GGACCGATGAAGA--TGCTCGA-AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACT 251703 ||||| | ||| | ||| | | | || |||| || || | ||| ||||| || Sbjct 6941 GGACCCAAGAACACCTGCGCAACAAGC--TTGCGG-CCTGTGTGGCCGTGGTACATGACC 6885 Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTCTGTAG---CTCTGAAGCAATATCACCAATC 251760 ||| || ||| | ||||| | | | || | |||| | | ||| | | Sbjct 6884 TCGAAACCGCGAGACTGGTAACCCATGTCACGAAGACGCGATGAAACGCTGTCAACTGT- 6826 Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTG--AATCAACACTTTGC 251818 || | | | ||| ||| |||| || | || || | || |||| ||| | Sbjct 6825 --GACATCGGTGAAAGGAGTGGCGTCACCCTCTTTTCCGATGAGCGAAGCAAC-CTTCGA 6769 Query 251819 CTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGA 251878 | || | ||| ||| || || || ||||||||| ||||| || ||||| |||| Sbjct 6768 C-AACTGACACTCAATCAAATGAGCAATCGTCATACGAGAAGGAATGGCGTGGGGGTTGA 6710 Query 251879 TGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA- 251935 |||||| ||| || | || || |||||| |||||||||| ||| | ||| Sbjct 6709 TGATGAGGTCAGGCACAACACCCTCGCGAGTGAAAGGCATATCCT---CCTGGCGGTAAG 6653 Query 251936 TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | | ||||| ||||| || |||||||||||||| ||||||||||||||| Sbjct 6652 TAATACCAATTGTTCCTTTCTGTCCGTGACGAGAGGCGAACTTATCACCAAT 6601 >seq2301 Length=34292 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 |||||| |||| || ||||||||||| | |||||| || || |||||||||| || | Sbjct 4826 GCGAGACCACCGAGGGAGTCACGGTCCAAGAAATTGGTCGGCTCGTCAAGGACGAGGAGA 4767 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| || | || || || ||||| |||||||| ||||| || || Sbjct 4766 TGGGGGTTATTCCACATGGCGCCTGCGAGGACGACCTTGACCTTCTGGCCGCCGGAGAG 4708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471758782949103