Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201
6-05-27] 3,119 sequences; 31,314,325 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3080 132 1e-25
seq3051 105 2e-17
seq2259 100 8e-16
seq2301 84.2 6e-11
>seq3080
Length=59079
Score = 132 bits (146), Expect = 1e-25
Identities = 226/328 (69%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
|| || ||||| |||||| | ||| | ||||||| | ||||| | ||||||
Sbjct 51506 TTCCTGACGGTTCCATCATACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACGT 51565
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
||||| ||||||||| | || || ||||| |||||||| ||||| |||||||| ||
Sbjct 51566 TGAATGTAACCAGTTTCGGCAGTCTTGACAGCGGTATCAATGAGACCCTCACGACCAGCC 51625
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
|| || |||||||| | ||| || || || | | | ||| ||||||| ||
Sbjct 51626 ATGGCGTGGAAGAAGAACTCAGATGGAGTGAGACCTCTCAGGTACGAGTTCTCAACAAAG 51685
Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778
||||| | |||||| || | || ||| || || ||||||||||| | || || |
Sbjct 51686 CCACGAGACTCGGGAGAGTAATCATCCTTTGTGAAATGTGGCAGGGTGCGGTACTTGAAT 51745
Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838
||| | || |||||||| || ||||| ||||||||| | | | ||||||| ||
Sbjct 51746 CCGAAAGGAATACGCTTACCCTCAACAGACTGCTGTCCGACAAGGGCAGTCATCTGGGAG 51805
Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAG 302866
||||| | | |||||||| ||||
Sbjct 51806 ATATTGATAGTGGAACCCTTGGAACCAG 51833
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| ||| |||| ||||| |||
Sbjct 50759 AGAATTTCCTTTAGACGCGGCACACCAAGTGTGACGTT---CTTAGACGACACACCGGCA 50815
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||||||||| || || | || |||| |||||||| ||| ||| || ||||
Sbjct 50816 AAATGGAAAGTATTGAGCGTCATCTGCGTAGCAGGCTCACCGATAGATTGGGCGGCAAGA 50875
Query 301933 ATACCAACCATTTCTCCTGG 301952
||||| ||||| || || ||
Sbjct 50876 ATACCGACCATCTCGCCGGG 50895
>seq3051
Length=56537
Score = 105 bits (116), Expect = 2e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| || || ||||| | |||||||| ||| |||||||| || ||| | | |
Sbjct 42881 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCAGTTAGGTGGATCCAAGATAAGGATTCTA 42940
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| ||||||||||| || |||| || ||||| || || ||| || | |
Sbjct 42941 CCTTTGCTCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCTCCGGCTCCT 43000
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||| ||||| ||||| || |||||||| | | |||| ||| || || ||||
Sbjct 43001 TCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACG 43060
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || || || | || |||| || |||||||| || |||
Sbjct 43061 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCC 43101
>seq2259
Length=28288
Score = 100 bits (110), Expect = 8e-16
Identities = 385/592 (65%), Gaps = 22/592 (4%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
||||||||||| | | || || || || ||| | ||||| || | || | || |
Sbjct 7181 ATAAGACCACAGATGTCGCAAACGTGCACTCTGAACGCATCCGACACCTCGAACAGTCTC 7122
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| | ||| ||||| |||||||| |||||||| ||||| || ||||||
Sbjct 7121 TCCTTCAAGAACGCACTTGCGCCGTGGGAAATCATGCAATCACGTTCCATCTCTCCGAAA 7062
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| | |||||||| | || | |||||| ||||||| | || ||| | | ||
Sbjct 7061 CGCAATCCACCATCTCTGGCACGACCCTCCACAGGCTGCCTCGTCAGAATTTGAGTTGGT 7002
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| ||| | | || ||| || | |||||||| | ||||||||||| ||| |
Sbjct 7001 CCTCTGGCTCTGGCGTGGATCTTGTCGTCGACCATATGTCTCAGACGCTGGTAATATGTG 6942
Query 251647 GGACCGATGAAGA--TGCTCGA-AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACT 251703
||||| | ||| | ||| | | | || |||| || || | ||| ||||| ||
Sbjct 6941 GGACCCAAGAACACCTGCGCAACAAGC--TTGCGG-CCTGTGTGGCCGTGGTACATGACC 6885
Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTCTGTAG---CTCTGAAGCAATATCACCAATC 251760
||| || ||| | ||||| | | | || | |||| | | ||| | |
Sbjct 6884 TCGAAACCGCGAGACTGGTAACCCATGTCACGAAGACGCGATGAAACGCTGTCAACTGT- 6826
Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTG--AATCAACACTTTGC 251818
|| | | | ||| ||| |||| || | || || | || |||| ||| |
Sbjct 6825 --GACATCGGTGAAAGGAGTGGCGTCACCCTCTTTTCCGATGAGCGAAGCAAC-CTTCGA 6769
Query 251819 CTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGA 251878
| || | ||| ||| || || || ||||||||| ||||| || ||||| ||||
Sbjct 6768 C-AACTGACACTCAATCAAATGAGCAATCGTCATACGAGAAGGAATGGCGTGGGGGTTGA 6710
Query 251879 TGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA- 251935
|||||| ||| || | || || |||||| |||||||||| ||| | |||
Sbjct 6709 TGATGAGGTCAGGCACAACACCCTCGCGAGTGAAAGGCATATCCT---CCTGGCGGTAAG 6653
Query 251936 TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| | ||||| ||||| || |||||||||||||| |||||||||||||||
Sbjct 6652 TAATACCAATTGTTCCTTTCTGTCCGTGACGAGAGGCGAACTTATCACCAAT 6601
>seq2301
Length=34292
Score = 84.2 bits (92), Expect = 6e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075
|||||| |||| || ||||||||||| | |||||| || || |||||||||| || |
Sbjct 4826 GCGAGACCACCGAGGGAGTCACGGTCCAAGAAATTGGTCGGCTCGTCAAGGACGAGGAGA 4767
Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
|| || | ||||||| || | || || || ||||| |||||||| ||||| || ||
Sbjct 4766 TGGGGGTTATTCCACATGGCGCCTGCGAGGACGACCTTGACCTTCTGGCCGCCGGAGAG 4708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471758782949103
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |