Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3051 118 1e-21 >seq3051 Length=56537 Score = 118 bits (130), Expect = 1e-21 Identities = 365/560 (65%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| | || | ||||| || || || || Sbjct 43104 GCAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGGTCAG 43045 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||| ||| || |||||||| |||||||| || |||| || || || || || ||||| Sbjct 43044 GCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAA 42985 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---TG 39792 ||| || || || || || || ||||| || | || | | | | ||| ||| || Sbjct 42984 GATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTATCTTG 42925 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | |||||| || || |||||||| | ||||| || || || || ||||| Sbjct 42924 GATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATT 42865 Query 39853 AAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||||| | |||| || | | || || | ||||| || || | || || Sbjct 42864 GAAGAGGT-ATGTCCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATG 42806 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || | || ||||| || ||| || || || ||||| || || | ||||| | | Sbjct 42805 TCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCTTCTGGGA 42746 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||||| | || | || | || || || || ||||| ||| |||| Sbjct 42745 TCTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGACGCGG 42686 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC----GGGTGTCAATTTATTC 40087 | || || || | ||||| || || || ||||| | | | | || ||| Sbjct 42685 CGAAGAAAGCGAGAACATGGGAGATGAAGTAGCGCTCATCATCATTGAGGCGA-TTGTTC 42627 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 ||||| | | || || || | ||| | || || |||||||| || || || || ||| Sbjct 42626 CAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAAGATGCTTCCGCC 42567 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 42566 TTCTTGTACATCTGCCAGAT 42547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882019143160