Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2289 185 3e-41 seq3080 113 1e-19 >seq2289 Length=32595 Score = 185 bits (204), Expect = 3e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||| || || ||||| |||||||| || | Sbjct 1410 TTTGCATACCACCACGAAGACGGAGAACCAAATGCAGGGTCGACTCCTTTTGAATGTTGT 1469 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||||||||| || || ||||| | Sbjct 1470 AGTCCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGT 1529 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||||||||| || || |||||||| || | || || |||||||| | |||||||| Sbjct 1530 CCGGAGGAATTCCCTCCTTGTCCTGAATCTTCGACTTGACGTTATCAATGGTATCAGATG 1589 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| |||| |||||||| || || || || |||||||||||||| Sbjct 1590 ATTCCACCTCAAGCGTAATCGTCTTTCCCGTAAGAGTCTTGACAAAAATCTGCAT 1644 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||||||||| || |||||||| || || || || || || Sbjct 1186 CATACCACCACGGAGGCGGAGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAGTC 1245 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || || || || || || || || || || ||||| || || Sbjct 1246 AGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGG 1305 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| || || |||| || || ||||| || | ||| || | || Sbjct 1306 TGGGATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTC 1365 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| |||||||||||| || || || || || || ||||| Sbjct 1366 GACTTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1416 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 140579 CCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTC 140638 |||||| || || || || || || || || || || ||||| || || || || || || Sbjct 1030 CCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATACCCTC 1089 Query 140639 TTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGT 140698 ||||||||||| || | || || || ||||| | || || | ||||| || || || Sbjct 1090 CTTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGT 1149 Query 140699 AACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||||||||| | || || || ||||||||||| Sbjct 1150 AATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 1188 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | || || || ||||| || || || || || || Sbjct 1870 CATACCACCGCGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 1929 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| || || || ||||| ||||||||||| || || Sbjct 1930 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGG 1989 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||||| || || || || || || ||| || || || || || | ||| || | | Sbjct 1990 GGGAATTCCCTCCTTGTCTTGGATCTT-GCTCTTAACGTTGTCGATGGTATCGGACGACT 2048 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| || || Sbjct 2049 CGACCTCAAGGGTGATGGTCTTGCCAGT 2076 >seq3080 Length=59079 Score = 113 bits (124), Expect = 1e-19 Identities = 217/320 (68%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186 ||||| ||||| || |||||||||||| | | | | ||| || || || |||| Sbjct 51464 CCATCCTCTCCGTAGATGAATTGAACAATGTCACCAAGAGAGTTCCTGACGGTTCCATCA 51523 Query 378187 TATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGA 378246 || | ||||| | |||||| || || || | || || || ||| |||||||||| Sbjct 51524 TACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACGTTGAATGTAACCAGTTTCG 51583 Query 378247 CTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAAT 378306 ||| || || || |||||||| | ||| |||||||| |||| || |||||||| || Sbjct 51584 GCAGTCTTGACAGCGGTATCAATGAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAAC 51643 Query 378307 TCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAA 378366 |||| ||||| || || | | | || |||||| ||| || | | | || || Sbjct 51644 TCAGATGGAGTGAGACCTCTCAGGTACGAGTTCTCAACAAAGCCACGAGACTCGGGAGAG 51703 Query 378367 TCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTT 378426 | ||||| ||||| |||| || | || || | || || || | ||||| || || Sbjct 51704 TAATCATCCTTTGTGAAATGTGGCAGGGTGCGGTACTTGAATCCGAAAGGAATACGCTTA 51763 Query 378427 CCATCAACATTCTGTTGACC 378446 || |||||| ||| || || Sbjct 51764 CCCTCAACAGACTGCTGTCC 51783 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| |||| || ||| ||||| | ||||| ||||| ||||||||||| Sbjct 50774 CGCGGCACACCAAGTGTGACGTTC---TTAGACGACACACCGGCAAAATGGAAAGTATTG 50830 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||| || || || || |||| || || ||||| || Sbjct 50831 AGCGTCATCTGCGTAGCAGGCTCACCGATAGATTGGGCGGCAAGAATACCGACCATCTCG 50890 Query 377578 CCAGGATTGACAATAGC 377594 || || ||||| | ||| Sbjct 50891 CCGGGGTTGACCAGAGC 50907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515193847119557