Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2358 190 5e-43 seq2289 176 1e-38 seq2629 129 1e-24 seq2657 111 4e-19 >seq2358 Length=47611 Score = 190 bits (210), Expect = 5e-43 Identities = 177/225 (79%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| ||||| | |||||| |||||||| || |||||||| ||||||| ||| Sbjct 17968 TCCACGAAGTCTCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAG 18027 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 18028 GGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAAT 18087 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || || || ||||| || || || || ||||| Sbjct 18088 TCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCACCTC 18147 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | ||||| Sbjct 18148 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 18192 >seq2289 Length=32595 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || || || ||||| ||||| ||||| || |||| || || Sbjct 1423 ACGAAGACGGAGAACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCCGACAGAGT 1482 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || ||||| ||||| || ||||| ||||||| ||| Sbjct 1483 GCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATTCC 1542 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| || ||||| ||||| ||| ||||| || Sbjct 1543 CTCCTTGTCCTGAATCTTCGACTTGACGTTATCAATGGTATCAGATGATTCCACCTCAAG 1602 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||||||||| |||||||| ||||| | |||||| Sbjct 1603 CGTAATCGTCTTTCCCGTAAGAGTCTTGACAAAAATCTGCAT 1644 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | ||||||||| ||||| || || ||||| || || | || || Sbjct 1652 CGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTG 1711 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| ||||| || ||||| || ||||| ||||||| || Sbjct 1712 CGACCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCC 1771 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| ||||| || ||||||||||| || |||||||| | | Sbjct 1772 TCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCCAAA 1831 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 1832 GTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1872 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| ||| ||| || |||||||| || || || || Sbjct 967 ACGAAGACGGAGCACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGT 1026 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||| || ||||||||||| ||||| || ||||| || ||||| || || | || Sbjct 1027 CCTCCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATACC 1086 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| || ||||| || |||||||| || ||||||||||| Sbjct 1087 CTCCTTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAG 1146 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| || | ||||| || || | |||||| Sbjct 1147 AGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 1188 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || ||||| || |||||||| || || | ||||| | ||||| Sbjct 1205 AGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 1264 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| || || | || ||||| || Sbjct 1265 TCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCT 1324 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || || || || || || || ||| Sbjct 1325 TGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTC 1384 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| || || | ||||| Sbjct 1385 TTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1416 >seq2629 Length=50867 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | |||||| || ||||||||||| || ||||| Sbjct 38007 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 38066 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| ||| |||||||| |||||||| || || || ||| Sbjct 38067 AGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 38126 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || ||| || ||||| || ||||| ||||| ||||| | ||||| || || Sbjct 38127 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 38185 >seq2657 Length=10989 Score = 111 bits (122), Expect = 4e-19 Identities = 191/276 (69%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | |||| |||||| |||||| ||||| || |||| Sbjct 3011 GTTCTTCTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTACAACATGAAAGGGTTTCC 3067 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| |||| | |||||||| | |||||||| |||||| || |||||| Sbjct 3068 TGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATAGTCTTGCG 3127 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || || |||||||| | ||||||| ||||||| || || || ||||| Sbjct 3128 ACCCTTACCCTCCTTCTCGTAGCCCTCGTAGAGCGCCTCGAACTCATCGCCGTAAACATC 3187 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | | || || || |||||||| | ||| |||| | |||| | || || || Sbjct 3188 TGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCGACACG 3247 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 ||||||||||| || | |||||| |||||||| Sbjct 3248 CTTCATGAAGAGATCCGGAATCCAGAGAGCATAGAA 3283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159105677750435