Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2005NY08_20[genbank_20GCA_5F001662605.1_20201 6-06-24] 571 sequences; 32,206,309 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq39 96.9 7e-15 seq181 89.7 1e-12 >seq39 Length=231448 Score = 96.9 bits (106), Expect = 7e-15 Identities = 412/643 (64%), Gaps = 25/643 (4%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| | ||| | | ||| | ||||| || || ||| ||| || || ||| || Sbjct 102831 GATTTCAACTACCAATACTTCGGCTTCAAGACTCTTGAGCGATCCTACCTTCTCCGCCTT 102772 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||||||| ||| || | ||||||||| | ||||| || || || || |||||| Sbjct 102771 GATGGCAAGGTCGCTGAGAGGCCACAGCACATGATTATGCGTGTTGCGGTGGGCATTCAC 102712 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTG---AACGCTGGATG 248985 || || || |||| ||||||| |||| | ||| | || || | Sbjct 102711 GGCGAGGATATTGAGAAGACAATCGAGACATACAACCTCATGTCTTCCAAATACT---TC 102655 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATC--AGCTGAGCTCGT 249043 ||||| || | || || |||||||| || ||||| | ||| | ||||| || | Sbjct 102654 ACACACGCTTCCCCAACACTCTTCAATGCTGGTACA--CCACAGGCCCAGCTGTCGTCCT 102597 Query 249044 GCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGA 249103 |||| | | | |||| | || || | | || || || |||||||| || || | | Sbjct 102596 GCTTCTTGGTCGACATGAAGGAGGATAGTATTGAGGGTATCTATGACACACTCAAG-ACA 102538 Query 249104 CG-GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAAC--ATCCGAG 249160 | || | ||| || || || || || ||||| | | || || | ||||| | Sbjct 102537 TGTGCCATGATCTCAAAGACTGCCGGAGGTATCGGATTGAACATC--CATCGTATCCGTG 102480 Query 249161 CGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTC 249220 | | ||| | |||||| ||||| || || | | |||||||| ||| | || | Sbjct 102479 CCACTGGTGCATACATCGCCGGTACCAACGGAAACTCGAACGGTATCGTTCCCATGCTCC 102420 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGT 249274 | ||| | |||||| |||| | | |||| | || ||||| || Sbjct 102419 GCGTGTTTAACAACACCGCGAGGTACGTTGACCAAGGTGGCAACAAGCGCCCC---GGTG 102363 Query 249275 CGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAA 249334 | |||||||| || | || |||||||| ||| | || |||||||||||| ||| || Sbjct 102362 CTTTCGCCATCTACGTCGAGCCATGGCACGCGGATGTCTTCGAGTTCCTGGACCTGAGAA 102303 Query 249335 AGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCG 249394 ||||| ||||||| ||| | | || |||||| | ||||||| || ||| || | | Sbjct 102302 AGAACCACGGCAAGGAGGAAGTCCGTGCCCGTGACTTGTTCTACGCTCTCTGGATCCCGG 102243 Query 249395 ACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 | | |||||| || ||| || ||||||| ||||| || Sbjct 102242 ATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACCCT 102200 >seq181 Length=31899 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 ||| || || | ||| || | ||||| |||||||| |||| ||||||| |||||||| Sbjct 13812 CTGCCCACCCTACAAAATCATCATCCTCGACGAGGCAGACAGCATGACGCAAGACGCGCA 13753 Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320 | ||| || ||||| ||||||||||| || | ||||| || || |||||||| Sbjct 13752 GAGCGCGCTGCGCCGCACGATGGAGACATACAGTAAGATCACGCGCTTCTGTCTGGTGTG 13693 Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||||||| || ||||| | || ||||| ||| ||| ||||| || || Sbjct 13692 TAACTACGTCACGCGAATCATTGATCCCCTGGCGAGTCGATGCAGTAAGTTCCGCTT 13636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073758544392128