Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2005NY08_20[genbank_20GCA_5F001662605.1_20201 6-06-24] 571 sequences; 32,206,309 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq39 188 9e-43 seq98 122 1e-22 >seq39 Length=231448 Score = 188 bits (208), Expect = 9e-43 Identities = 567/866 (65%), Gaps = 16/866 (2%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||| |||| ||||||||||| ||||||| | | | | || | | |||||| Sbjct 101900 GCAAGAGACGCCAAGTTACACACGGCCACCTCATCTGGAGCAGAGTACTCGACAATCTCA 101959 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| || || | ||| || || | || | || || ||||| ||| || Sbjct 101960 GTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA 102019 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||| || | ||||| || | || || ||| ||||||| || | ||| | | | Sbjct 102020 GCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTAC 102079 Query 63123 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCT--TTCGTATAGA--- 63176 || | | || | ||||| || | ||| | |||| | || ||| ||| Sbjct 102080 CAAA-GCTTCTGGGCCTTGATGGTC---TTGCGAC-CCTTACCCTCCTTCTCGTAGCCCT 102134 Query 63177 -GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 ||| | | |||||||| || || |||| | |||||| ||| ||||| | || Sbjct 102135 CGTAGAGCGCC--TCGAACTCATCGCCGTAAACGTCCGCCAATCCAGGGCATTCGTTGGG 102192 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 ||||| | | ||| || |||| | || || || ||||| |||||||| || ||||| Sbjct 102193 GCACATGAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCCGGGATCCA 102252 Query 63296 AAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 ||||| || || || || | | | |||||| || || |||||| | || | Sbjct 102253 GAGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAGGT 102311 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | |||||| | | | ||| | ||||| || || | ||| ||||| | | | || || | Sbjct 102312 CCAGGAACTCGAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCGGGGC 102371 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63474 | ||||| || || || || | ||| || |||||||| ||| | || | | ||| |||| Sbjct 102372 GCTTGTTGCCACCTTGGTCAACGTACCTCGCGGTGTTGTTAAACACGCGGAGCATGGGAA 102431 Query 63475 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC 63534 |||||||| || | || |||||||||| ||| || | ||| ||||||| ||| | Sbjct 102432 CGATACCGTTCGAGTTTCCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATACGAT 102491 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 || | || || || || || | || ||||| | || ||| || | |||| Sbjct 102492 GGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGT 102551 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63654 ||||||| || || || ||||| || |||||| | | || ||| |||| ||| Sbjct 102552 CATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGG 102611 Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63714 | | || || ||||| || | || || |||||||| || || |||| ||| | Sbjct 102612 CCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACA 102671 Query 63715 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63774 || ||||| ||||| || | || |||||| ||||| || || || |||| Sbjct 102672 TGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCGCCGTGAATGCCCACCGCAACAC 102731 Query 63775 GCATTAACATGTGCTGAGGTCTTTCA 63800 |||| | ||||||||| || || ||| Sbjct 102732 GCATAATCATGTGCTGTGGCCTCTCA 102757 >seq98 Length=123527 Score = 122 bits (134), Expect = 1e-22 Identities = 363/554 (66%), Gaps = 7/554 (1%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || || | |||||||| || | || || || ||||| || || || |||||| | Sbjct 97722 CATGACACCAGTCTTTTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCTGC 97781 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 ||| || || || |||||||| || || || ||||| ||||| | || | | | Sbjct 97782 CAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGACTTGTAG-TACTTCTCGTTAC 97840 Query 33398 CAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 | | ||| | || || || |||||||| || || ||| ||||||| | | Sbjct 97841 CGAGGGAGAGCAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 97900 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || | || | ||||| ||| |||| | || || || || ||| || | Sbjct 97901 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCCTGCTCGATGCTGACGG 97960 Query 33517 CATTTGTTATAATAAATCTAACGGT-TTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 | | || || | | ||||| ||||| | || || ||| | || || Sbjct 97961 CCTCGGTAATGACGTCTTGAACGGCCTTCTTGCTTGGGCGG-TGTCTGAGGTGGGAGAAG 98019 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 | | || ||||| || ||| ||||||||||| | || | ||||| ||||| Sbjct 98020 AGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAG 98079 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || | ||| |||||||| || || ||||| || ||||| ||||| || || || Sbjct 98080 GTCAGGCCAGCCATGAGGCCACGTTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCAGAG 98139 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTG 33752 |||||||| || || || ||||| ||||||| || | || | | || | | Sbjct 98140 AAGAAGATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGAGCGAAGGTGGAATCCTTA 98199 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || || |||||| | ||||| ||||||||||| || | ||||| || || || ||| Sbjct 98200 TCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCAATG 98259 Query 33813 GCATTAAAGAGATA 33826 ||||| ||||| || Sbjct 98260 GCATTGAAGAGGTA 98273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813104676880