Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2024MN13_20[genbank_20GCA_5F001662595.1_20201 6-06-24] 2,827 sequences; 30,179,533 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq442 176 6e-39 seq335 123 3e-23 >seq442 Length=20621 Score = 176 bits (194), Expect = 6e-39 Identities = 633/973 (65%), Gaps = 24/973 (2%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| || |||| ||||||||||| ||||||| | | | | || | | ||||| Sbjct 17779 GCAAGGGACGCCAAGTTACACACGGCCACCTCATCTGGAGCAGAGTACTCGACGATCTCT 17720 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| || || | ||| || || | || | || || ||||| ||| || Sbjct 17719 GTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA 17660 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||| || | ||||| || | || || ||| ||||||| || | ||| | | | Sbjct 17659 GCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTAC 17600 Query 63123 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCT--TTCGTATAGAG-T 63178 || | | || | ||||| || || ||| | |||| | || ||| ||| | Sbjct 17599 CAAA-GCTTCTGGGCCTTGAT---AGTCTTGCGAC-CCTTACCCTCCTTCTCGTAGCCCT 17545 Query 63179 ATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 | | || |||| |||||| || |||||| |||||| ||| ||||| | || | Sbjct 17544 CGTCGAGCGCCTCGAGCTCGTCGCCGTAAACATCTGCCAATCCAGGGCATTCGTTGGGGC 17485 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 |||| | | ||| || |||| | || || || ||||| |||||||| |||||||| | Sbjct 17484 ACATGAGGGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGA 17425 Query 63298 GAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63356 |||| || || || || | | | |||||| || || |||||| | | || Sbjct 17424 GAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTACCGTGGTTCTTTCTCAAGTCC 17366 Query 63357 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63416 |||||| | | | ||| | ||||| || || | ||| ||||| | | | ||||| || Sbjct 17365 AGGAACTCAAAGACATCCGCGTGCCATGGCTCAACGTAGATGGCGAAAGCACCAGGGCGC 17306 Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 ||||| || || || || | ||| || |||||||| || | || | | ||| || | | Sbjct 17305 TTGTTGCCACCTTGGTCAACGTACCTTGCGGTGTTGTTGAACACGCGGAGCATAGGGACA 17246 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA---TTA 63533 || ||||| || | || |||||||||| || || | ||| ||||||| ||| | Sbjct 17245 ATGCCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGG 17186 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || | || || || || || || | || ||||| | || || || | ||| Sbjct 17185 ATATTCAAT---CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTG 17129 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 |||||||| || || || ||||| || |||||| | | || ||| || | ||| Sbjct 17128 TCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGACGAAAGCTGG 17069 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713 | | || || ||||| || | || || |||||||| || || |||| ||| Sbjct 17068 GCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGAC 17009 Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGAC 63772 | || ||||| ||||| || | || |||||| || | ||||| || || || || Sbjct 17008 ATGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACCGCAAC 16950 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | ||||||||| || || ||| ||| ||| | | | | | |||||| Sbjct 16949 ACGCATAATCATGTGCTGTGGCCTCTCAGCAACCTTGCCATCAAGTCGGAGAAGGTAGGA 16890 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 63890 | |||| || || || || || || | ||| ||||| || || ||||| | | | Sbjct 16889 TCGCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAA--TCACGGTCGTAGAGGACA 16832 Query 63891 ACCGAATTGAGCT 63903 | || ||||||| Sbjct 16831 GCAGAGTTGAGCT 16819 >seq335 Length=25434 Score = 123 bits (136), Expect = 3e-23 Identities = 361/553 (65%), Gaps = 5/553 (1%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || || | |||||||| || | || || || ||||| || || || |||||| | Sbjct 12636 CATGACACCAGTCTTTTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCTGC 12577 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || || || ||||||||||| || || ||||| ||||| | || | | | Sbjct 12576 CAGGGAGATGTTCTCCATGAAATCGAATGGGTTGGTCGACTTGTAG-TACTTCTCGTTAC 12518 Query 33398 CAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 | | ||| | || || || |||||||| || || ||| ||||||| | | Sbjct 12517 CGAGGGAGAGCAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 12458 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || | || | ||||| ||| |||| | || ||||| || ||| || | Sbjct 12457 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGCTGACAG 12398 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 | | || || | | |||| | | || || | ||| | || || | Sbjct 12397 CCTCGGTAATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAAGA 12338 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | || ||||| ||| ||| |||||||| || | || | ||||| || || | Sbjct 12337 GGAGGCAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGG 12278 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | || || | ||| ||||||||||| || ||||| || ||||| ||||| || ||||| | Sbjct 12277 TCAGGCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGA 12218 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 33753 ||||||| || || || ||||| ||||||| || | || || | | | | | Sbjct 12217 AGAAGATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTAT 12158 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | || |||||| | ||||| ||||||||||| || | ||||| || || || |||| Sbjct 12157 CTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGG 12098 Query 33814 CATTAAAGAGATA 33826 |||| ||||| || Sbjct 12097 CATTGAAGAGGTA 12085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795343820560