Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2024MN13_20[genbank_20GCA_5F001662595.1_20201 6-06-24] 2,827 sequences; 30,179,533 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9 190 5e-43 seq2304 149 1e-30 seq50 129 1e-24 seq442 98.7 2e-15 >seq9 Length=89190 Score = 190 bits (210), Expect = 5e-43 Identities = 177/225 (79%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| ||||| | |||||| |||||||| || |||||||| ||||||| ||| Sbjct 17900 TCCACGAAGTCTCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAG 17959 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 17960 GGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAAT 18019 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || || || ||||| || || || || ||||| Sbjct 18020 TCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCACCTC 18079 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | ||||| Sbjct 18080 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 18124 >seq2304 Length=1284 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| ||| ||| || |||||||| || || | || || Sbjct 316 ACGAAGACGGAGCACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCCGAGCGT 257 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||| || ||||||||||| ||||| || ||||| || ||||| || || | || Sbjct 256 CCTCCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCC 197 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || |||||||| || ||||| |||||||| || || ||||||||||| Sbjct 196 CTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCAACCTCGAG 137 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || | ||||| || || | |||||| Sbjct 136 CGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 95 >seq50 Length=60635 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | |||||| || ||||||||||| || ||||| Sbjct 21179 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 21120 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| ||| |||||||| |||||||| || || || ||| Sbjct 21119 AGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 21060 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || ||| || ||||| || ||||| ||||| ||||| | ||||| || || Sbjct 21059 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 21001 >seq442 Length=20621 Score = 98.7 bits (108), Expect = 2e-15 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | ||||| ||||| |||||| ||||| || |||| Sbjct 17687 GTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCATCCTTGTACAACATGAAAGGGTTTCC 17631 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| |||| | |||||||| | |||||||| |||||| || |||||| Sbjct 17630 TGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATAGTCTTGCG 17571 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || || |||||||| | || |||| |||||| || || || ||||| Sbjct 17570 ACCCTTACCCTCCTTCTCGTAGCCCTCGTCGAGCGCCTCGAGCTCGTCGCCGTAAACATC 17511 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | | || || || |||||||| | ||| |||| | |||| | || || || Sbjct 17510 TGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCGACACG 17451 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 ||||||||||| || | |||||| || ||||| Sbjct 17450 CTTCATGAAGAGATCCGGAATCCAGAGAGCGTAGAA 17415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159110014427855