Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20BL308_20[genbank_20GCA_5F001630595.1_202016 -05-27] 3,126 sequences; 31,419,026 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3078 123 3e-23 >seq3078 Length=65249 Score = 123 bits (136), Expect = 3e-23 Identities = 549/863 (64%), Gaps = 10/863 (1%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || || | |||||||| || | ||||| || ||||| || || || |||||| | Sbjct 49404 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCTGC 49345 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || || || |||||||| || || || ||||| ||||| | || | | | Sbjct 49344 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGACTTGTAG-TACTTCTCGTTGC 49286 Query 33398 CAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 | | ||| | || || || |||||||| || || ||| ||||||| | | Sbjct 49285 CGAGGGAGAGCAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 49226 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || | || | ||||||||| | || | || || || || |||| || | Sbjct 49225 TCATGCCGAGCAGGGCACAGGGAAGAGCCTCTGTCAAGAACTCCTGCTCGATGGTGACAG 49166 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 | | || || | | |||| | | || || | ||| | || || | Sbjct 49165 CCTCGGTGATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAAGA 49106 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | || ||||| || ||| ||||||||||| | || | ||||| || || | Sbjct 49105 GGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGG 49046 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | || || | ||| || |||||||| || ||||| || ||||| ||||| || ||||| | Sbjct 49045 TCAGGCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATGGACGCGAAGGAGCCGGAGA 48986 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 33753 ||||||| || || || || || ||||||| || | || || | | | ||| Sbjct 48985 AGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCAAAGGTAGAATCCTTGT 48926 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | || |||||| | ||||| ||||||||||| || | ||||| || || || |||| Sbjct 48925 CTTGGATCCACCTGACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGG 48866 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 |||| ||||| || | || | || || | || || ||||| | || | Sbjct 48865 CATTGAAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGT 48806 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 | | || | || ||||| ||||| || || || |||||||| || | || || | Sbjct 48805 ATGTCTCGGCGTGGATGTTCTCAATCATGATTTGGAAACCGTAGAAGCAGCGGGCTTCTG 48746 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 ||||| || || | | || || || | || || || || ||||| ||| | Sbjct 48745 GGATCTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGACG 48686 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTA-GTTTA 34049 | || || || || | || || || || || | ||||| | || | | || Sbjct 48685 CGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTC-GTTGAGACGGTTG 48627 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 ||||| || | | || || || | || | || || ||||||| || || |||||| Sbjct 48626 TTCCAGTCGTGAAGGTCCTTGGAGAGGTCAATCTCCTCTGCTGTCCAGAAAGACGCCTCT 48567 Query 34110 GCCTTTTTATACATATTCCAGAT 34132 ||||| |||||||| | |||||| Sbjct 48566 GCCTTCTTATACATCTGCCAGAT 48544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792989877280