Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20BL549_20[genbank_20GCA_5F001630585.1_202016 -04-25] 2,106 sequences; 25,864,194 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1789 143 4e-29 >seq1789 Length=64549 Score = 143 bits (158), Expect = 4e-29 Identities = 369/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||| ||||||||||| | | || || ||||| || || || || Sbjct 52334 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTCGAGAAGGTAAGG 52275 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || | ||| ||||||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 52274 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCAAAGGAGCCGGAGAAGAAG 52215 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || |||||||||||||| || | || | | | | | |||| || Sbjct 52214 ATACCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTAGAATCCTTGTCTTGG 52155 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| | ||||| ||||||||||| || | ||||| || || || |||||||| Sbjct 52154 ATCCACCTGACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATAGTCTCAATGGCATTG 52095 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| || | || | || || | || || ||||| | || || | Sbjct 52094 AAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTC 52035 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || | |||||||| || || || || || |||||||| || | ||||| | || Sbjct 52034 TCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATT 51975 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | | || ||||| | || || || || ||||||||| ||| || Sbjct 51974 TGGACCTCACTGCTGAAGCGTTCGAGGAGGTTCTCGTTGACAATTCCGTCAGAGGCGGCG 51915 Query 50377 AAAAACGCCAATACATGTTTTATAAAAT---GTTTTTCGTTGGGTGTTA-GTTTATTCCA 50432 || || || | || || || || | | | ||| | | || | | || ||||| Sbjct 51914 AAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCG-TCGTTGAGACGGTTGTTCCA 51856 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 || | | || || || | || | || || | ||||| || |||||||| ||||| Sbjct 51855 GTCGTGAAGGTCCTTGGAAAGGTCAATCTCCTCTGCGGTCCAGAAAGATGCCTCGGCCTT 51796 Query 50493 TTTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 51795 CTTGTACATCTGCCAGAT 51778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718249891573840