Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20BL549_20[genbank_20GCA_5F001630585.1_202016 -04-25] 2,106 sequences; 25,864,194 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1789 127 3e-24 >seq1789 Length=64549 Score = 127 bits (140), Expect = 3e-24 Identities = 364/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||| |||||||| || | | || | ||||| || || || || Sbjct 52334 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTCGAGAAGGTAAGG 52275 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || | ||| ||||||||||| || ||||| || || || ||||| || || || |||||| Sbjct 52274 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCAAAGGAGCCGGAGAAGAAG 52215 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241 || || || || || |||||||||| || | || | | | | |||| || Sbjct 52214 ATACCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTAGAATCCTTGTCTTGG 52155 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||| | ||||| ||||||||||| || | ||||| || || || |||||||| Sbjct 52154 ATCCACCTGACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATAGTCTCAATGGCATTG 52095 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| || | || | || || | ||||| ||||| | || || | Sbjct 52094 AAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTC 52035 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || | |||||||| || || || || || |||||||| || | |||||| | | Sbjct 52034 TCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATT 51975 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | | || ||||| | || ||||| || ||||||||| ||| || Sbjct 51974 TGGACCTCACTGCTGAAGCGTTCGAGGAGGTTCTCGTTGACAATTCCGTCAGAGGCGGCG 51915 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTA-ATTTATTCCAA 42538 || || || | || || || || || || || || || | || ||||| Sbjct 51914 AAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGACGGTTGTTCCAG 51855 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 || | | || || || | || | || ||| | ||||| || ||||| || ||||| Sbjct 51854 TCGTGAAGGTCCTTGGAAAGGTCAATCTCCTCTGCGGTCCAGAAAGATGCCTCGGCCTTC 51795 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 51794 TTGTACATCTGCCAGAT 51778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671121532260560