Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20BL549_20[genbank_20GCA_5F001630585.1_202016 -04-25] 2,106 sequences; 25,864,194 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1523 107 2e-18 seq1271 104 3e-17 >seq1523 Length=98661 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || ||||| || | || || || | || || Sbjct 96418 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCG 96359 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| || || ||||||||||| | || | | |||||||||| | Sbjct 96358 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 96299 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | |||||| ||| ||||| || | ||||| || ||| Sbjct 96298 ATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 96239 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || ||||||||||| Sbjct 96238 CCCGTCAGGGTCTTCACGAAGATTTGCAT 96210 >seq1271 Length=16661 Score = 104 bits (114), Expect = 3e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||||||||||| || || ||||| || ||| |||| | Sbjct 15719 ACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTGCC 15660 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||||||||| ||||| || ||||||||||| | ||| | | |||||| Sbjct 15659 ATCCTCCAGCTGCTTACCAGCAAATATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTT 15600 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||| ||| | || | |||| ||| | | | ||||| || || || |||| || Sbjct 15599 ATCC-TGAATCTTCGACTTGA-CGTTGTCAATGGTGTCAGAAGACTCAACCTCGAGAGTA 15542 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || ||||| || || || ||||| Sbjct 15541 ATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 15504 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| ||||| ||||| || | ||||| || | || || Sbjct 15028 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCA 14969 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| || || || ||||||||||| | || | | |||||||||| | Sbjct 14968 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 14909 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | | | | |||||| ||| || || || | |||||||| ||| Sbjct 14908 ATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCCAAAGTGATGGTCTTG 14849 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||| ||||| Sbjct 14848 CCAGTGAGGGTCTTGACGAAGATCTGCAT 14820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||||| |||||| || | || || |||||||| || ||||| Sbjct 15467 CTCCTTCTGGATGTTGTAATCAGACAGAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 15408 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||| || ||| || |||| | Sbjct 15407 AATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCTTGGATCTTCGACTTGACGTT 15348 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||| || ||| || || || | ||| || || || || || || ||||| || Sbjct 15347 ATCGATCGTATCCGACGACTCGACTTCCAGCGTAATCGTCTTTCCGGTGAGAGTCTTGAC 15288 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 15287 GAAGATTTGCAT 15276 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || |||||| ||||| ||||| || | ||| || || | || || Sbjct 15256 ACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCC 15197 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||||||||| || || | ||||||||||| | || | || |||||||| | || Sbjct 15196 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGT-CTTG 15138 Query 42120 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 | |||| | |||| ||| | | | || || || || || || | ||| || || | Sbjct 15137 AATTTTGGACTTGA-CGTTGTCAATGGTATCAGATGACTCGACCTCCAGCGTAATCGTCT 15079 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || || || ||||| Sbjct 15078 TGCCAGTAAGAGTCTTGACGAAAATCTGCAT 15048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543198499923040