Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1081 98.7 2e-15 seq146 89.7 1e-12 >seq1081 Length=56605 Score = 98.7 bits (108), Expect = 2e-15 Identities = 308/472 (65%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| |||||||||| |||| | ||| || ||||| | || ||||| ||| Sbjct 14503 TTTGCTCAGCGTCTCGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCCTTC 14444 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | |||| || ||||| ||| || | ||| ||||||| | || |||||| Sbjct 14443 GCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACGAG 14384 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 ||||| || || ||||||||||| || | | |||| | || | | || | || Sbjct 14383 CTCATCTCCCGTGATGAGGGTCTCCA-CACCGACTTCGCCTGCCTCCTCTTCTCCCACCT 14325 Query 230352 C-----CAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406 | | ||||| | || | | ||| || | ||||||| || || || Sbjct 14324 TAGACACCGCCCAAGCAAGCA-----GGCCGTCCAAGACGTCATTACCGAGGCTGTCAGC 14270 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAA 230466 | ||| | |||||| | ||| || |||| ||| || | ||||||||||| || Sbjct 14269 ATCGAGCAAGAGTTCTTGACTGAGGCACTTCCCTGTGCGCTGCTCGGCATGAACGCC-AA 14211 Query 230467 CTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 ||| ||| || ||||| || ||||| |||||| | | | | | || ||| |||| Sbjct 14210 CTTGATGAAGCAATACATTGAGTTCGTCGCCGACAGGCTGCTGCTCTCCCTCGGTAACGA 14151 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 ||| ||||| || | ||||| || | || |||||| ||| || || ||| || Sbjct 14150 GAAGTACTACAAGTCGACCAACCCATTCGACTTCATGGAGAACATCTCCCTGGCAGGAAA 14091 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||||||||||| ||||| ||| ||||| || | | ||||||| ||| Sbjct 14090 GACCAACTTCTTCGAGAAGCGCGTCGCCGACTACCAAAAGACTGGTGTCATG 14039 >seq146 Length=163387 Score = 89.7 bits (98), Expect = 1e-12 Identities = 199/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 319369 AGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 319428 |||| |||||||||| | ||||| || ||| || || |||| || || |||||| Sbjct 133373 AGGGTGTAGTAACTCTTGGCCTCGGGCTTCTGCTTGACAAATTCGGCCAAGTTGCCCTTG 133432 Query 319429 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGG 319488 || ||||| || ||||| ||| ||| ||||| || | |||||| Sbjct 133433 TAGCAGGCGAGCTTCTTTCCGGGCTCGTAGTGGTAGATATCCGTGCAGACTTCATCGAGG 133492 Query 319489 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCA 319548 || ||||||||||| || || |||| | | | | || | || | | ||||| || Sbjct 133493 AAGCCGGAGTCGTGAGAAACGATCAGGGAAGTGATCTCGGTGTGGGTCTTGAGGTAATCC 133552 Query 319549 ATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGC 319608 || |||| | ||||| | ||| | || ||||| || ||||| ||||| || | Sbjct 133553 TGCAGCCACTTGACGTTGGCAACATCCAAGTGATTGGTAGGTTCGTCCAGAAGGAGAACA 133612 Query 319609 TTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | || |||| | ||| || | ||||||||||| ||||| ||||| || ||||| || Sbjct 133613 TCAGCCTTCATCAACATAGCTCTAGCAAGAGCGAGCTTCATCTTCCATCCACCGGACAG 133671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057799685254220