Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1081 104 3e-17 >seq1081 Length=56605 Score = 104 bits (114), Expect = 3e-17 Identities = 172/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| |||||||| || | || | ||||| || || || || Sbjct 14343 CAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 14402 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || | ||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 14403 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 14462 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 || || || || || || ||||||| || | | || | | | | || || Sbjct 14463 ATACCCTCGACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTATCTTGG 14522 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| | ||||| ||||||||||| || | |||||| || ||||| || ||||| Sbjct 14523 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGGTCTCGATGGCATTG 14582 Query 24372 AAGAGATA 24379 ||||| || Sbjct 14583 AAGAGGTA 14590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708285793120