Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq528 125 6e-24 seq790 113 4e-20 seq724 93.3 4e-14 >seq528 Length=17027 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||||||||| ||| || || ||| |||||| Sbjct 15284 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGGGCGACCGTCCTCG 15225 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| | || || |||||||| || ||||| |||||||||||||| | Sbjct 15224 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 15165 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| | ||| ||||| | || | || ||| Sbjct 15164 ATCTTCGATTTCACATTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTG 15105 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 15104 CCAGTGAGGGTCTTGACAAAGATCTGCAT 15076 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || ||||||||||| || || ||||| |||||| Sbjct 15512 ACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCGTCCTCG 15453 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| | || || |||||||| || ||||| || ||||||||||| | Sbjct 15452 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGA 15393 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||| || | || | || ||||| | || | ||| || Sbjct 15392 ATCTTCGACTTGACGTTATCAATGGTATCGGATGAT-TCCACCTCAAGCGTAATCGTCTT 15334 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || ||||| || |||||||||||||| Sbjct 15333 GCCCGTAAGAGTCTTGACAAAAATCTGCAT 15304 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| || || ||||| || ||||||| || | | |||||| Sbjct 15969 CACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGCTCAGCGTCCTCCCATCCTC 15910 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| | ||||||||| || || || || |||||||| || Sbjct 15909 GAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTG 15850 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | |||||||| ||| ||||||| || | || || Sbjct 15849 AATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTT 15790 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || ||||||||||| Sbjct 15789 TCCGGTCAAGGTCTTGACGAAAATCTGCAT 15760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | ||||| ||||| Sbjct 15056 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 14997 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| ||||| ||||| || || || || |||||||||||| Sbjct 14996 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 14937 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | |||| ||| || | ||||||||| | ||| | || ||| Sbjct 14936 ATCTTGCTCTTAACGTTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTG 14877 Query 118710 CCGGTCA 118716 || |||| Sbjct 14876 CCAGTCA 14870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || || ||||| |||||||||||| || || Sbjct 15728 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCC 15669 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || |||||||| || || || ||||||||||| ||| || || || Sbjct 15668 GCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTTAGACTTG 15609 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| |||| |||||| || | || | || || ||||| || || Sbjct 15608 ACGTTATCGATGGTATCCGACGACTCGACTTCTAGCGTAATTGTCTTTCCGGTGAGGGTC 15549 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 15548 TTAACGAAGATTTGCAT 15532 >seq790 Length=49868 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | ||||| |||||||| | || ||||| || || ||||||||||| Sbjct 29743 ACCTCCACGAAGTCTCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 29684 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||||||||| || || ||| |||| || |||||||| || || || Sbjct 29683 AAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 29624 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| || || | ||| || Sbjct 29623 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCAC 29564 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||| | ||| | || ||||| ||||| || || || || || |||||| || Sbjct 29563 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGACT 29512 >seq724 Length=143787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | |||||| |||||||||||| || ||||| |||| Sbjct 12896 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 12837 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || ||||| || |||||||||||| || || || || | ||| Sbjct 12836 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 12777 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | || || | | ||||||||| | ||| | || ||||| |||| || || || || Sbjct 12776 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 12718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820914569448