Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq528 116 4e-21 seq790 107 2e-18 >seq528 Length=17027 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 15267 CTCCTTCTGAATGTTGTAGTCGGACAGAGGGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 15208 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | || |||||||||| ||| | || | ||| | Sbjct 15207 AATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGATTTCACAT 15149 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || || | |||||||| ||||| || || ||||| | Sbjct 15148 TGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTGA 15089 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 15088 CAAAGATCTGCAT 15076 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || |||||| ||||| ||||| || | ||| || || |||| || Sbjct 15512 ACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCGTCCTCG 15453 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || || ||||||||||| | || | | |||||||||| || Sbjct 15452 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC-TG 15394 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | |||| | | | || ||| |||||||| || | ||| || || || Sbjct 15393 AATCTTCGACTTGACGTTATCAATGGTATCGGATGATTCCACCTCAAGCGTAATCGTCTT 15334 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| ||||| || ||||| Sbjct 15333 GCCCGTAAGAGTCTTGACAAAAATCTGCAT 15304 Score = 93.3 bits (102), Expect = 5e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 ||||||| || || | | ||| | |||||| || | ||||||||||| || || || | Sbjct 15994 CCTATTGGCCGCCGCGAAGACGGAGCACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTAT 15935 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || ||| |||| | | || || |||||||||||||| || || | |||||||||| Sbjct 15934 AGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGT 15875 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCT 43126 | | || | | |||||| ||| ||| | || | |||| ||| | | | ||||| Sbjct 15874 CCGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTGA-CGTTGTCAATGGTGTCCGA 15817 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| || ||||| || || || | ||||| || || || ||||| Sbjct 15816 AGACTCAACCTCGAGAGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 15760 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||| || || | || || |||||||| || ||||| Sbjct 15723 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 15664 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||| || ||| || |||| | Sbjct 15663 AATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTTAGACTTGACGTT 15604 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||| || || || | ||| || || || || || || ||||| || Sbjct 15603 ATCGATGGTATCCGACGACTCGACTTCTAGCGTAATTGTCTTTCCGGTGAGGGTCTTAAC 15544 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 15543 GAAGATTTGCAT 15532 >seq790 Length=49868 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || |||||||| | || || || | || || Sbjct 29724 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCG 29665 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || || ||||||||||| | || | | |||||||||| | Sbjct 29664 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGG 29605 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | || ||| ||| ||||| || | ||||| || ||| Sbjct 29604 ATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTG 29545 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || ||||||||||| Sbjct 29544 CCCGTCAGGGTCTTCACGAAGATTTGCAT 29516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571804776990320