Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq528 129 5e-25 >seq528 Length=17027 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||||||||||||||| ||| |||| |||| || Sbjct 15512 ACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCGTCCTCG 15453 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| ||||| | ||||||||||||| | Sbjct 15452 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGA 15393 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || |||||||| | |||||||||||| Sbjct 15392 ATCTTCGACTTGACGTTATCAATGGTATCGGATGATTCCACCTCAAGCGTAATCGTCTTG 15333 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||||||| ||||| || ||||| Sbjct 15332 CCCGTAAGAGTCTTGACAAAAATCTGCAT 15304 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||||| |||| || Sbjct 15284 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGGGCGACCGTCCTCG 15225 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| ||||| | |||||||||||| | Sbjct 15224 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 15165 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | |||| ||| ||||||| || || |||||| Sbjct 15164 ATCTTCGATTTCACATTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTG 15105 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 15104 CCAGTGAGGGTCTTGACAAAGATCTGCAT 15076 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||||||||||||||| ||||| |||||| |||| | | || || Sbjct 15968 ACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGCTCAGCGTCCTCCCATCCTCG 15909 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| ||||| ||||| || || | ||||||||| ||| | Sbjct 15908 AGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGA 15849 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | ||| ||||| | ||||| ||||| Sbjct 15848 ATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTTT 15789 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || || || ||||| Sbjct 15788 CCGGTCAAGGTCTTGACGAAAATCTGCAT 15760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || ||| |||| || Sbjct 15056 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 14997 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 ||||| || |||||||| |||| || || ||||| || || | ||||||||||| Sbjct 14996 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTC 14941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066561927674