Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1037 116 7e-21 seq1081 89.7 1e-12 >seq1037 Length=26954 Score = 116 bits (128), Expect = 7e-21 Identities = 181/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| |||||||||||||| ||||| || || ||| || || ||||| |||||| Sbjct 7566 CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTGTCATAGATACCC 7507 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGG-GTGTGACTGT 94904 ||||||||||| || | | | | | | |||||| || || || |||| |||| ||| Sbjct 7506 TCAATGCTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCCTGTG-GTGT 7448 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || ||||| |||||||| || || || || | |||||||| | || Sbjct 7447 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 7388 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| || || | || || ||||||||||| || || |||||||||||||| Sbjct 7387 TGTCTCGATTGTCTTCTCAATATCCTCACCGTGAATGCCCACCGCAACACGCATAATCAT 7328 Query 95025 GTCCTGAGGGCGCTCA 95040 || ||| || | |||| Sbjct 7327 GTGCTGTGGCCTCTCA 7312 >seq1081 Length=56605 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 9/227 (4%) Strand=Plus/Minus Query 101852 ATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATT------TG 101905 ||||||||||||| | ||||| ||| ||||| ||| |||| |||| | Sbjct 14557 ATCAAGAAGAAGGCCGACTGGGCAGTTAGGTGGATCCAAG---ATAAGGATTCTACCTTT 14501 Query 101906 GCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCA 101965 || | | | |||||||| ||||| || || || |||||||| || | ||||| Sbjct 14500 GCTCAGCGTCTCGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCC 14441 Query 101966 TCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 |||||||||||| ||||||| | || | || |||| || |||| ||| || ||| || Sbjct 14440 TCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACGAGCTC 14381 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || || | || || ||||| || |||||| || ||| | || || Sbjct 14380 ATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCCTGCCTCCTCTT 14334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989561253793270