Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1037 183 4e-41 seq1081 125 9e-24 >seq1037 Length=26954 Score = 183 bits (202), Expect = 4e-41 Identities = 417/621 (67%), Gaps = 10/621 (2%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || |||||| |||||| ||| ||||| | || ||||| | | | Sbjct 7923 TCGAACTCATCGCCGTAAACATCTGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTC 7864 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63307 || || |||| | || || || ||||| |||||||| |||||||| ||||| || || Sbjct 7863 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGTAGAAC 7804 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || || | | | |||||| || || |||||| | | || |||||| | | Sbjct 7803 AAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTCCAGGAACTCAAA 7745 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || || Sbjct 7744 GACATCCGCGTGCCATGGCTCAACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACC 7685 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | ||| || |||||||| || | || | | ||| || | ||| ||||| || Sbjct 7684 TTGGTCAACGTACCTTGCGGTGTTGTTGAACACGCGGAGCATAGGGACAATGCCGTTCGA 7625 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA---TTACTAATTGATAG 63544 | || |||||||||| || || | ||| ||||||| ||| | || | || Sbjct 7624 GTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGGATATTCAAT-- 7567 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 || || || || || | || ||||| | || || || | ||||||||||| || Sbjct 7566 -CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTGTCATAGATACC 7508 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || |||||||| || |||||| | | || ||| |||| ||| | | || Sbjct 7507 CTCAATGCTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCCTGTGGTGT 7448 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || ||||| || | || || |||||||| || || |||| ||| | || ||||| Sbjct 7447 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 7388 Query 63725 CGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACA 63783 ||||| || | || |||||| || | ||||| || || || |||||||| | || Sbjct 7387 TGTCTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACCGCAACACGCATAATCA 7329 Query 63784 TGTGCTGAGGTCTTTCAACAA 63804 ||||||| || || ||| ||| Sbjct 7328 TGTGCTGTGGCCTCTCAGCAA 7308 >seq1081 Length=56605 Score = 125 bits (138), Expect = 9e-24 Identities = 177/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||| |||||||| || | || | ||||| || || || || Sbjct 14343 CAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 14402 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || | ||| ||||||||||| || ||||| || ||||| ||||| || ||||| |||||| Sbjct 14403 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 14462 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || ||||| ||||||| || | || || | | | | || || Sbjct 14463 ATACCCTCGACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTATCTTGG 14522 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||| | ||||| ||||||||||| || | |||||| || || || |||||||| Sbjct 14523 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGGTCTCGATGGCATTG 14582 Query 33819 AAGAGATA 33826 ||||| || Sbjct 14583 AAGAGGTA 14590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803476340320