Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1037 183 4e-41
seq1081 125 9e-24
>seq1037
Length=26954
Score = 183 bits (202), Expect = 4e-41
Identities = 417/621 (67%), Gaps = 10/621 (2%)
Strand=Plus/Minus
Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248
|||||||| || || |||||| |||||| ||| ||||| | || ||||| | | |
Sbjct 7923 TCGAACTCATCGCCGTAAACATCTGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTC 7864
Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63307
|| || |||| | || || || ||||| |||||||| |||||||| ||||| || ||
Sbjct 7863 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGTAGAAC 7804
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
|| || | | | |||||| || || |||||| | | || |||||| | |
Sbjct 7803 AAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTCCAGGAACTCAAA 7745
Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
| ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || ||
Sbjct 7744 GACATCCGCGTGCCATGGCTCAACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACC 7685
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
|| || | ||| || |||||||| || | || | | ||| || | ||| ||||| ||
Sbjct 7684 TTGGTCAACGTACCTTGCGGTGTTGTTGAACACGCGGAGCATAGGGACAATGCCGTTCGA 7625
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA---TTACTAATTGATAG 63544
| || |||||||||| || || | ||| ||||||| ||| | || | ||
Sbjct 7624 GTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGGATATTCAAT-- 7567
Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604
|| || || || || | || ||||| | || || || | ||||||||||| ||
Sbjct 7566 -CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTGTCATAGATACC 7508
Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664
|| |||||||| || |||||| | | || ||| |||| ||| | | ||
Sbjct 7507 CTCAATGCTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCCTGTGGTGT 7448
Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724
|| ||||| || | || || |||||||| || || |||| ||| | || |||||
Sbjct 7447 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 7388
Query 63725 CGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACA 63783
||||| || | || |||||| || | ||||| || || || |||||||| | ||
Sbjct 7387 TGTCTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACCGCAACACGCATAATCA 7329
Query 63784 TGTGCTGAGGTCTTTCAACAA 63804
||||||| || || ||| |||
Sbjct 7328 TGTGCTGTGGCCTCTCAGCAA 7308
>seq1081
Length=56605
Score = 125 bits (138), Expect = 9e-24
Identities = 177/248 (71%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| ||||| ||| ||| |||||||| || | || | ||||| || || || ||
Sbjct 14343 CAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 14402
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| | ||| ||||||||||| || ||||| || ||||| ||||| || ||||| ||||||
Sbjct 14403 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 14462
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758
|| || || || ||||| ||||||| || | || || | | | | || ||
Sbjct 14463 ATACCCTCGACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTATCTTGG 14522
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
|||||| | ||||| ||||||||||| || | |||||| || || || ||||||||
Sbjct 14523 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGGTCTCGATGGCATTG 14582
Query 33819 AAGAGATA 33826
||||| ||
Sbjct 14583 AAGAGGTA 14590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629803476340320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |