Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1081 178 2e-39 seq1037 158 2e-33 seq1761 91.5 2e-13 >seq1081 Length=56605 Score = 178 bits (196), Expect = 2e-39 Identities = 375/558 (67%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| | || || || ||||| | || ||| | ||||| Sbjct 14899 ATCTGGCAGATGTACAAGAAGGCGGAAGCATCTTTCTGGACAGCAGAGGAGATTGATCTC 14840 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | || | | ||| |||||| | || || || Sbjct 14839 TCCAAGGACCTTCACGACTGGAACAACCGCCTCAATGACGATGAGCGCTACTTCATCTCC 14780 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | || ||||| |||| ||||||||||| |||||||| || || | || Sbjct 14779 CACGTTCTCGCTTTCTTCGCCGCGTCCGATGGAATTGTCAACGAGAACCTCCTCGAGCGC 14720 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || ||||| | ||||| ||||| |||||||||||||| Sbjct 14719 TTCAGCAGCGAGGTCCAGATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATCATGATC 14660 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG--- 125315 |||||| | ||| | || | ||||| || || |||| ||||| || | | Sbjct 14659 GAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAGGCT 14600 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 ||||| | | || ||||| || || ||||| || | || | ||| || ||||| Sbjct 14599 CAACGCACATAC---CTCTTCAATGCCATCGAGACCATTCCTTGTATCAAGAAGAAGGCC 14543 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || |||||||| | || | | ||| | | || | | || || || Sbjct 14542 GACTGGGCAGTTAGGTGGATCCAAGATAAGGATTCTACCTTTGCTCAGCGTCTCGTTGCC 14483 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| || || ||||| |||||||| || || || || |||| || ||||||||| Sbjct 14482 TTCGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATTTTCTGGCTCAAG 14423 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||| | || ||||| | |||||| | || || || || ||||| Sbjct 14422 AAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACGAGCTCATCTCCCGTGATGAGGGT 14363 Query 125556 CTACACTGTGACTTTGCC 125573 || ||| ||||| ||| Sbjct 14362 CTCCACACCGACTTCGCC 14345 >seq1037 Length=26954 Score = 158 bits (174), Expect = 2e-33 Identities = 347/515 (67%), Gaps = 4/515 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| ||| | | ||| | || || |||||| | ||| ||| | || | Sbjct 7613 ACCAACGGAAACTCGAACGGCATTGTCCCTATGCTCCGCGTGTTCAACAACACCGCAAGG 7672 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 |||||| || || ||||| || || || || ||| | ||| ||||| | || || ||| Sbjct 7673 TACGTTGACCAAGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACGTTGAGCCATGG 7732 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 |||||||| || ||||| || | || || | || ||| ||| || || | || Sbjct 7733 CACGCGGATGTCTTTGAGTTCCTGGACTTGAGAAAGAACCACGGCAAGGAGGAAGTCCGT 7792 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | |||||||| || || |||||| | || ||| | ||||||||||| ||| | | Sbjct 7793 GCCCGTGACTTGTTCTACGCTCTCTGGATTCCGGATCTCTTCATGAAGCGTGTCGAGAAG 7852 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| |||||| ||| ||||||||| || | || || || | ||| | ||| Sbjct 7853 AACGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGATTGGCAGATGTTTACGGC 7912 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGACGAGT 97165 || ||||| ||||| ||| || ||||||| | ||||| | || |||| | | Sbjct 7913 GATGAGTTCGAGGCGCTCTACGAGGGCTACGAGAAGGAGGGTAAGGGTCGCAAGACTA-T 7971 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | | || | |||| || ||| | |||| | | ||||| ||||| |||| || | Sbjct 7972 CAAGGC-CCAGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAGGAAACCCTT 8030 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| | ||||||||| || || ||||| |||||||| || | || |||||| Sbjct 8031 TCATGTTGTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCC 8090 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| |||||||| || ||||| |||||| Sbjct 8091 GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTAC 8125 >seq1761 Length=22641 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||| ||||| || || || ||||||||||||||| |||||| || ||||||| || Sbjct 7490 GAGGGTGATCTCGGCCCTGTCTACGGATTCCAGTGGCGGCACTTTGGGGCCAAGTACGTG 7549 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA 70161 ||| | |||| ||||| |||| |||||||||||||| Sbjct 7550 GACGCCCAGACGGACTACACGGGACAGGGTGTTGATCA 7587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741042581747440