Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq528 91.5 1e-13 >seq528 Length=17027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || ||||||||||| || || || ||||| ||| | | | | |||| || Sbjct 15969 CACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGCTCAGCGTCCTCCCATCCTC 15910 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| ||||| || ||||||||| | || | ||| || ||||| Sbjct 15909 GAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTG 15850 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||||| | ||| || || | | ||| || |||| ||||| || || Sbjct 15849 AATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTT 15790 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||| || || || ||||| Sbjct 15789 TCCGGTCAAGGTCTTGACGAAAATCTGCAT 15760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354769843009512