Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1037 192 7e-44 seq1081 125 9e-24 >seq1037 Length=26954 Score = 192 bits (212), Expect = 7e-44 Identities = 422/626 (67%), Gaps = 10/626 (2%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| || || |||||| |||||||||| ||||| | || ||||| | | | Sbjct 7923 TCGAACTCATCGCCGTAAACATCTGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTC 7864 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63256 || || |||| | || || || ||||| |||||||| |||||||| ||||| || || Sbjct 7863 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGTAGAAC 7804 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || || | || | |||||| || || |||||| | | || |||||| | | Sbjct 7803 AAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTCCAGGAACTCAAA 7745 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || || Sbjct 7744 GACATCCGCGTGCCATGGCTCAACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACC 7685 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 || || | ||| || |||||||| || | || | | ||| || | ||| ||||| || Sbjct 7684 TTGGTCAACGTACCTTGCGGTGTTGTTGAACACGCGGAGCATAGGGACAATGCCGTTCGA 7625 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA---TTACTAATTGATAG 63493 | || |||||||||| || || ||| ||||||| ||| | || | || Sbjct 7624 GTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGGATATTCAAT-- 7567 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || || || | || ||||| | || || || | |||||||||||||| Sbjct 7566 -CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTGTCATAGATACC 7508 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| |||||||| || |||||| | | || ||| |||| ||| | || Sbjct 7507 CTCAATGCTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCCTGTGGTGT 7448 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || ||||| || | || || |||||||| || || |||| ||| | || ||||| Sbjct 7447 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 7388 Query 63674 CGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACA 63732 ||||| || | || |||||| || | ||||| || || || |||||||| | || Sbjct 7387 TGTCTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACCGCAACACGCATAATCA 7329 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTG 63758 ||||||| || || ||| | | |||| Sbjct 7328 TGTGCTGTGGCCTCTCAGCAACCTTG 7303 >seq1081 Length=56605 Score = 125 bits (138), Expect = 9e-24 Identities = 177/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| |||||||| || | || || ||||| || || || || Sbjct 14343 CAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 14402 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || | ||| ||||||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 14403 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 14462 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || ||||| ||||||| || | || || | | | | || || Sbjct 14463 ATACCCTCGACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTATCTTGG 14522 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||| | ||||| ||||||||||| || | |||||| || || || |||||||| Sbjct 14523 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGGTCTCGATGGCATTG 14582 Query 33541 AAGAGATA 33548 ||||| || Sbjct 14583 AAGAGGTA 14590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933230409040