Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq528 132 4e-26 seq790 127 2e-24 seq724 102 7e-17 >seq528 Length=17027 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || || || ||| | || ||||| |||||| | || Sbjct 15304 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTTGAGGTGGAATCATCC 15363 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || ||||| ||||||||||||||||| || || || Sbjct 15364 GATACCATTGATAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 15423 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | || || |||||| Sbjct 15424 CAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCGGACTACAAC 15483 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | ||||| ||| | || | || || ||| Sbjct 15484 ATTCAGAAGGAGTCGACCCTGCATTTGGTTCTCCGTCTTCGTGGTGGT 15531 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || | |||||||| | ||| | | || Sbjct 14872 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGATACCATCGACAACGTTAAGAGC 14931 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| || || || |||||||| || || |||||||| Sbjct 14932 AAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAGCAACGTCTGATCTTCGCCGGCAAG 14991 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||||||| ||||||| |||||||| || || || || ||| | || Sbjct 14992 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 15051 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || ||||||| ||| Sbjct 15052 TTGGTCCTTCGTCTGCGCGGTGGT 15075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||| | || || || | || Sbjct 15076 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCC 15135 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || ||||| ||||||||||| ||||| || || || Sbjct 15136 GACACCATCGACAATGTGAAATCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 15195 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| | | ||||| |||||| Sbjct 15196 CAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCCCTCTGTCCGACTACAAC 15255 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || || | || | ||||| ||| Sbjct 15256 ATTCAGAAGGAGTCGACTCTTCACTTGGTCCTTCGTCTTCGCGGTGGT 15303 >seq790 Length=49868 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| ||||| ||||| | || Sbjct 29516 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 29575 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || || || ||||||||||| || || || || || Sbjct 29576 GATACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 29635 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| ||||||| | || ||||||||| Sbjct 29636 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAAC 29695 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || || || || || | || |||||| Sbjct 29696 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGAGACTTCGTGGAGGT 29743 >seq724 Length=143787 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || || || || || || |||| ||||| || || || ||||||| | Sbjct 12718 TTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATC 12777 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||||||||| ||||| || || || || || || Sbjct 12778 GACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGAATTCCTCCGGACCAGCAGCGCCTG 12837 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||||| | ||||| |||||||| || || Sbjct 12838 ATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTTTCCGACTACAACATCCAGAA 12896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718822909610