Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq146 100 6e-16 seq44 87.8 4e-12 >seq146 Length=163387 Score = 100 bits (110), Expect = 6e-16 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243 ||| ||||| || ||||| || || ||||| ||||||||||||||| ||| ||| | Sbjct 133189 CAACGGTGCCGGAAAGTCCACTCTCATCAAGCTCCTGACTGGCGAGA-CCATCCCAACCA 133131 Query 280244 GGGGTCCGT-TTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTC 280301 || |||| ||| |||||| |||||| |||| || | |||| || |||||||| | Sbjct 133130 CTGG-CCGTGTTGAGAAGCACCCCAACTTGCGTATTGGTTACATCAAGCAGCACGCCCTT 133072 Query 280302 CACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCA 280361 | ||| | |||| || || || | ||| || ||||| ||| | |||||||| |||||| Sbjct 133071 GAGCACGTGGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTCCAGTGGCGTTATGCA 133012 Query 280362 A 280362 | Sbjct 133011 A 133011 >seq44 Length=50883 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| ||| | || || |||| ||||| ||||| ||| Sbjct 46753 GGTGAGGATCTGTGCAACTGCACCTTCAACTTGGCCTACGGTGCCAAGATCCTGCTCAAC 46694 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | | ||||||||| | || || ||||| ||| || || || | Sbjct 46693 CAGACCCATCTCCGCCTGAAGCGTGGCCAGCGTTACGGTCTTTGCGGACCTAACGGTTCC 46634 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| || | | Sbjct 46633 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCAAAGAA 46575 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| |||| || ||||||||| | ||||| Sbjct 46574 GAGCGAGGTCAAGACCGTGTTCGTCGAGCACGACCTTGACTC 46533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027813174528754