Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq528 120 3e-22 seq790 82.4 8e-11 >seq528 Length=17027 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | | |||||||| |||||||||||||| | Sbjct 15530 CCACCACGAAGACGGAGAACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAC 15471 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | | || || ||||| ||||||||||| Sbjct 15470 AGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 15411 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || | || | | || | ||| |||| || ||||| Sbjct 15410 ATACCCTCCTTGTC-CTGAATCTTCGACTTGACGTTATCAATGGTATCGGATGATTCCAC 15352 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | ||| || || || ||||| || |||||||||||||| Sbjct 15351 CTCAAGCGTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTGCAT 15304 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || || ||||||||| || || || | Sbjct 15269 GACTCCTTCTGAATGTTGTAGTCGGACAGAGGGCGACCGTCCTCGAGCTGCTTGCCCGCG 15210 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || || ||||| ||||||||||| || || || ||||| ||| | || | ||| Sbjct 15209 AAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC-CTGAATCTTCGATTTCAC 15151 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| |||||| ||||| | || | || || ||||| || || | Sbjct 15150 ATTG-TCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCT 15092 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 15091 TGACAAAGATCTGCAT 15076 Score = 102 bits (112), Expect = 8e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||| |||||||||| || | | |||||||| || ||||| | | | Sbjct 15951 CTCCTTCTGGATGTTATAGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTACCAGCAAA 15892 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | |||||| |||||||| || ||||| || || || ||| | || | || | | Sbjct 15891 GATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTGACGT 15833 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 ||| | | |||||| | ||||| ||||||| || | || || || |||| || || Sbjct 15832 TGT-CAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTTTCCGGTCAAGGTCTTG 15774 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 15773 ACGAAAATCTGCAT 15760 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| Sbjct 15074 CCACCGCGCAGACGAAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 15015 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| ||||| || |||| |||| ||||| || |||||||| || Sbjct 15014 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 14955 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || | || | |||| ||| || | ||| |||| |||||| | Sbjct 14954 ATTCCCTCCTTGTC-TTGGATCTTGCTCTTAACGTTG-TCGATGGTATCGGACGACTCGA 14897 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||| | || | || || ||||||| Sbjct 14896 CCTCAAGGGTGATGGTCTTGCCAGTCA 14870 >seq790 Length=49868 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || | || || |||||||| || || |||| Sbjct 29709 GACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 29650 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 29649 AAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 29590 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | || |||| |||||||||||| | || | || || || ||||| || || Sbjct 29589 TTGT-CGATAGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTT 29531 Query 138600 TACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 29530 CACGAAGATTTGCATGACT 29512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251271315680