Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq790 100 2e-16 seq528 96.9 2e-15 seq724 82.4 5e-11 >seq790 Length=49868 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||| |||||||||| ||| || ||||| ||||| || ||||||||| | || || Sbjct 29730 CTCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCA 29671 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| || ||||| || || || || |||||||| | || | ||||||||| Sbjct 29670 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTG 29611 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGT 34942 || ||||| ||||| || | ||||| || | ||| || || | ||| Sbjct 29610 TCCTGGATCTTGGACTTGAC--AT--TGTCGATAGTATCGGACGACTCCACCTCAAGGGT 29555 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || |||||||| ||||| ||||| Sbjct 29554 GATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 29516 >seq528 Length=17027 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||||||||| ||||| || || || | || || Sbjct 15284 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGGGCGACCGTCCTCG 15225 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | ||||||||||| | Sbjct 15224 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 15165 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||| || || | ||||| || | |||||| || | || ||||| Sbjct 15164 ATCTTCGATTTCAC--AT--TGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGT 15109 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| ||||| ||||||||||||||| Sbjct 15108 CTTGCCAGTGAGGGTCTTGACAAAGATCTGCATA 15075 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| |||||||| ||| | || | || || ||||| || || || || Sbjct 15494 TCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAA 15435 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| |||||| Sbjct 15434 ATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTA 15375 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || | || || || || ||||| |||||||| ||| Sbjct 15374 TCAATGGTATCGGATGATTCCACCTCAAGCGTAATCGTCTTGCCCGTAAGAGTCTTGACA 15315 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 15314 AAAATCTGCATA 15303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||||| || ||||| ||||||||||| || | | |||| || Sbjct 15968 ACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGCTCAGCGTCCTCCCATCCTCG 15909 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || |||||||| | || | |||||||| || | Sbjct 15908 AGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGA 15849 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | |||||| |||| || ||||| ||| Sbjct 15848 ATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTTT 15789 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| || || ||||||||| Sbjct 15788 CCGGTCAAGGTCTTGACGAAAATCTGCATA 15759 >seq724 Length=143787 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| ||||| | ||| |||| || ||||| || || ||||| || Sbjct 12896 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 12837 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| |||||| ||||| || | Sbjct 12836 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGAC--AT--T 12781 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || ||| || || | ||| ||||| || ||||| | ||||| || Sbjct 12780 GTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGAC 12721 Query 34970 AAAG 34973 ||| Sbjct 12720 GAAG 12717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626502089232