Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq477 136 1e-26 seq1081 111 5e-19 seq1744 91.5 4e-13 >seq477 Length=84057 Score = 136 bits (150), Expect = 1e-26 Identities = 227/328 (69%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || ||||| |||||| | ||| | ||||||| | ||||| | |||||| Sbjct 76463 TTCCTGACGGTTCCATCATACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACGT 76522 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||| ||||||||| | || || ||||| |||||||| ||||| |||||||| || Sbjct 76523 TGAATGTAACCAGTTTCGGCAGTCTTGACAGCGGTATCAATGAGACCCTCACGACCAGCC 76582 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || ||||||||||| | ||| || || || | | | ||| ||||||| || Sbjct 76583 ATGGCATGGAAGAAGAACTCAGATGGAGTGAGACCTCTCAGGTACGAGTTCTCAACAAAG 76642 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| | |||||| || | || ||| || || ||||||||||| | || || | Sbjct 76643 CCACGAGACTCGGGAGAGTAATCATCCTTTGTGAAATGTGGCAGGGTGCGGTACTTGAAT 76702 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 ||| | || |||||||| || ||||| ||||||||| | | | ||||||| || Sbjct 76703 CCGAAAGGAATACGCTTACCCTCAACAGACTGCTGTCCGACAAGGGCAGTCATCTGGGAG 76762 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||||| | | |||||||| |||| Sbjct 76763 ATATTGATAGTGGAACCCTTGGAACCAG 76790 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| ||||| ||| Sbjct 75716 AGAATTTCCTTTAGACGCGGCACACCAAGTGTGACGTT---CTTGGACGACACACCGGCA 75772 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | || |||| |||||||| ||| ||| || |||| Sbjct 75773 AAATGGAAAGTATTGAGCGTCATCTGCGTAGCAGGCTCACCGATAGATTGGGCGGCAAGA 75832 Query 301933 ATACCAACCATTTCTCCTGG 301952 ||||| ||||| || || || Sbjct 75833 ATACCGACCATCTCGCCGGG 75852 >seq1081 Length=56605 Score = 111 bits (122), Expect = 5e-19 Identities = 200/287 (70%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGCCATTAG 133431 || || || || |||||||| || | || | ||||| || | ||||| ||||| | Sbjct 14629 CTCATCGACACATACATCAAGGAGCAGGCTCA-ACGCACATACCTCTTCAATGCCATC-G 14572 Query 133432 CGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGC 133490 || |||||||||| || ||||| | |||||||| ||| |||||||| || ||| Sbjct 14571 AGACCATTCCTTGTATCAAGAAGAAGGCCGACTGGGCAGTTAGGTGGATCCAAGATAAGG 14512 Query 133491 GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTG 133550 | | | |||||| ||||||||||| || |||| || ||||| || || ||| | Sbjct 14511 ATTCTACCTTTGCTCAGCGTCTCGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCCG 14452 Query 133551 GTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTT 133610 | | ||| ||| ||||| ||||| || |||||||| | | |||| ||| || | Sbjct 14451 GCTCCTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCT 14392 Query 133611 CTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| || || || | || |||| || |||||||| || ||| Sbjct 14391 CGAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCC 14345 >seq1744 Length=13726 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || ||||| |||||||||| ||| || | Sbjct 6795 TGAGCAATCGTCATACGAGAAGGAATGGCGTGGGGGTTGATGATGAGGTCAGGCACAACA 6854 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TGTTTCCAATAGTTCCCTTT 251955 || || |||||| |||||||||| ||| | ||| | | ||||| ||||| || Sbjct 6855 CCCTCGCGAGTGAAAGGCATATCCT---CCTGGCGGTAAGTAATACCAATTGTTCCTTTC 6911 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||||| ||||||||||||||| Sbjct 6912 TGTCCGTGACGAGAGGCGAACTTATCACCAAT 6943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783769352578