Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq477 136 1e-26
seq1081 111 5e-19
seq1744 91.5 4e-13
>seq477
Length=84057
Score = 136 bits (150), Expect = 1e-26
Identities = 227/328 (69%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
|| || ||||| |||||| | ||| | ||||||| | ||||| | ||||||
Sbjct 76463 TTCCTGACGGTTCCATCATACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACGT 76522
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
||||| ||||||||| | || || ||||| |||||||| ||||| |||||||| ||
Sbjct 76523 TGAATGTAACCAGTTTCGGCAGTCTTGACAGCGGTATCAATGAGACCCTCACGACCAGCC 76582
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
|| ||||||||||| | ||| || || || | | | ||| ||||||| ||
Sbjct 76583 ATGGCATGGAAGAAGAACTCAGATGGAGTGAGACCTCTCAGGTACGAGTTCTCAACAAAG 76642
Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778
||||| | |||||| || | || ||| || || ||||||||||| | || || |
Sbjct 76643 CCACGAGACTCGGGAGAGTAATCATCCTTTGTGAAATGTGGCAGGGTGCGGTACTTGAAT 76702
Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838
||| | || |||||||| || ||||| ||||||||| | | | ||||||| ||
Sbjct 76703 CCGAAAGGAATACGCTTACCCTCAACAGACTGCTGTCCGACAAGGGCAGTCATCTGGGAG 76762
Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAG 302866
||||| | | |||||||| ||||
Sbjct 76763 ATATTGATAGTGGAACCCTTGGAACCAG 76790
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| |||||||| ||||| |||
Sbjct 75716 AGAATTTCCTTTAGACGCGGCACACCAAGTGTGACGTT---CTTGGACGACACACCGGCA 75772
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||||||||| || || | || |||| |||||||| ||| ||| || ||||
Sbjct 75773 AAATGGAAAGTATTGAGCGTCATCTGCGTAGCAGGCTCACCGATAGATTGGGCGGCAAGA 75832
Query 301933 ATACCAACCATTTCTCCTGG 301952
||||| ||||| || || ||
Sbjct 75833 ATACCGACCATCTCGCCGGG 75852
>seq1081
Length=56605
Score = 111 bits (122), Expect = 5e-19
Identities = 200/287 (70%), Gaps = 4/287 (1%)
Strand=Plus/Minus
Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGCCATTAG 133431
|| || || || |||||||| || | || | ||||| || | ||||| ||||| |
Sbjct 14629 CTCATCGACACATACATCAAGGAGCAGGCTCA-ACGCACATACCTCTTCAATGCCATC-G 14572
Query 133432 CGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGC 133490
|| |||||||||| || ||||| | |||||||| ||| |||||||| || |||
Sbjct 14571 AGACCATTCCTTGTATCAAGAAGAAGGCCGACTGGGCAGTTAGGTGGATCCAAGATAAGG 14512
Query 133491 GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTG 133550
| | | |||||| ||||||||||| || |||| || ||||| || || ||| |
Sbjct 14511 ATTCTACCTTTGCTCAGCGTCTCGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCCG 14452
Query 133551 GTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTT 133610
| | ||| ||| ||||| ||||| || |||||||| | | |||| ||| || |
Sbjct 14451 GCTCCTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCT 14392
Query 133611 CTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| ||||| || || || | || |||| || |||||||| || |||
Sbjct 14391 CGAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCC 14345
>seq1744
Length=13726
Score = 91.5 bits (100), Expect = 4e-13
Identities = 113/152 (74%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || ||||||||| ||||| || ||||| |||||||||| ||| || |
Sbjct 6795 TGAGCAATCGTCATACGAGAAGGAATGGCGTGGGGGTTGATGATGAGGTCAGGCACAACA 6854
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TGTTTCCAATAGTTCCCTTT 251955
|| || |||||| |||||||||| ||| | ||| | | ||||| ||||| ||
Sbjct 6855 CCCTCGCGAGTGAAAGGCATATCCT---CCTGGCGGTAAGTAATACCAATTGTTCCTTTC 6911
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||||||||||| |||||||||||||||
Sbjct 6912 TGTCCGTGACGAGAGGCGAACTTATCACCAAT 6943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471783769352578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |