Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1081 131 2e-24 seq1038 123 3e-22 seq548 123 3e-22 seq1037 95.1 1e-13 seq519 93.3 5e-13 >seq1081 Length=56605 Score = 131 bits (144), Expect = 2e-24 Identities = 186/256 (73%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||| | ||||||||| |||||||||||||| || |||| | ||| ||| Sbjct 14394 AAGGTCAGGCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCG 14453 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| ||||| |||||||| || || ||| | | ||| |||| |||||| || || Sbjct 14454 GAGAAGAAGATACCCTCGACAGCAGCGAAGGCAACGAGACGCTGAGCAAAG--GTAGAAT 14511 Query 869330 CCCT-CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGT 869388 || | |||| ||||||| | | |||||||||||||| ||| | | | || | || Sbjct 14512 CCTTATCTTG--GATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGGT 14569 Query 869389 GTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCA 869447 |||||||| ||||||| || | || ||| | ||||||| || |||||||| | Sbjct 14570 CTCGATGGCATTGAAGAGGTATGTGC-GTTGAGCCTGCTCCTTGATGTATGTGTCGATGA 14628 Query 869448 GGAGCGAATAGGTCTC 869463 |||| || || ||||| Sbjct 14629 GGAGGGAGTATGTCTC 14644 Score = 129 bits (142), Expect = 7e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||| | |||||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 14057 GTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCTGCCAGGGAGATGTTCTCCAT 14116 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||||| || |||||||| ||| ||| ||||| || ||||| | Sbjct 14117 GAAGTCGAATGGGTTGGTCGACTTGTAGTACTTCTCGTTACCGAGGGAGAGCAGCAGCCT 14176 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||||||| ||||| ||||| || ||| | | |||||||||||||| ||||| Sbjct 14177 GTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACA 14236 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || | ||| ||| ||||||| |||||| ||| |||||| Sbjct 14237 GGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGCTGACAGCCTCG 14282 >seq1038 Length=48602 Score = 123 bits (136), Expect = 3e-22 Identities = 128/166 (77%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 19038 CGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGC 19097 |||||||| ||||||||| ||||| || || ||||| | ||||| || || Sbjct 34492 CGCCAAGA---CAGCATCGGTGGCACCGTCACCTGCGTCATCAGGAACGTCCCCAGCGGT 34548 Query 19098 CTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATC 19157 ||||||||||| ||||| |||||||| |||||| |||||||||||||||||| ||| Sbjct 34549 CTCGGCGAGCCCTGCTTCGACAAGATGGAGGCCATGCTCGCCCACGCCATGCTCAGCATC 34608 Query 19158 CCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 || ||||||||||| || ||||| ||| ||| || |||| |||| Sbjct 34609 CCCGCCACCAAGGGTTTTGAGATCGGCTCCGGCTTCGGCGGCTGCG 34654 Score = 118 bits (130), Expect = 1e-20 Identities = 267/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCG-TCGGCTGCATCATCGACGGCGTGCCGCCGT 18151 || || |||||||||||| | || || | || |||||| |||| ||| || || Sbjct 33867 CAGCTATGGCGAGTCGCATTGT-CGCTCGGTGGGATGCATCGTCGATGGCTGCCCCCCAG 33925 Query 18152 GCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGG 18211 | ||| || |||| ||||| |||||||||||| || || |||||||| |||||| Sbjct 33926 GAATGGAGCTCACCGAAGCCGATATCCAGCCTCAGATGACCCGTCGCCGACCCGGCCAGA 33985 Query 18212 GCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGA 18271 |||| || | || || ||| | ||| || | ||| ||||| || ||||| ||| Sbjct 33986 GCGCCCTGACGACTCCCCGCGATGAGAAGGACCAGGTCGAAATCCACTCTGGCACCGAGT 34045 Query 18272 ACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCG 18331 |||| |||| || || | ||| ||||| | | || ||||| |||||||| || Sbjct 34046 TCGGCGTCACCCTGGGTACCCCCATCGGCATGCTCGTCCGCAACCAGGACCAGCGCCCTA 34105 Query 18332 TCGACT------ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCT 18385 |||| | || |||| | | ||||| || || || ||||||| || | Sbjct 34106 AGGACTACGGAAACTCGACCATGGACCTCTTCCCGCGCCCATCGCATGCCGACTGGACAT 34165 Query 18386 ACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGA 18445 || | | ||||||||| ||||||| |||||||| || || || || ||||||| Sbjct 34166 ACCTCGAGAAGTACGGCGTCAAGGCCAGCTCGGGCGGTGGTCGCAGCTCCGCGCGCGAGA 34225 Query 18446 CCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 | | | | || || ||||| ||| | || || |||| Sbjct 34226 CTATTGGGAGAGTGGCTGCCGGTGCGATTGCGGACAAAT 34264 >seq548 Length=85367 Score = 123 bits (136), Expect = 3e-22 Identities = 134/175 (77%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | ||||||| || |||| ||| | ||||| ||| | ||||| ||| Sbjct 1822 CGACATCGAGGAGTGGGACCAGAAGTTCATGCAA-GTCGACCAGGAGATGCTCTTCGAGA 1880 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | ||||||||| |||||||||| ||||||||||| || ||||| | || |||||| | | Sbjct 1881 TCATCCTCGCCTCCAACTACCTGGACATCAAGCCCCTCCTCGACGTCGGCTGCAAGACCG 1940 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 |||| || ||||| ||||| ||| ||||||||||| | ||||| ||||| || Sbjct 1941 TGGCGAATATGATTAAGGGGAAGAGTCCCGAGGAGATTAGGAAGACGTTTAATAT 1995 >seq1037 Length=26954 Score = 95.1 bits (104), Expect = 1e-13 Identities = 175/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| | || |||| ||| || ||||||||||| || || | |||||| || Sbjct 7683 TGGTCAACGTACCTTGCGGTGTTGTTGAACACGCGGAGCATAGGGACAATGCCGTTCGAG 7624 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||| || || | ||| || || | ||| || | ||| || ||| Sbjct 7623 TTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGGATATTCAATCCG 7564 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || | ||| ||||| | || || ||||| ||||| ||||| ||||| Sbjct 7563 ATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTGTCATAGATACCCTCA 7504 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || |||||||||| || | ||||| ||||| || | || | || || Sbjct 7503 ATGCTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCCTGTGGTGTACCA 7444 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 || |||||||| || || Sbjct 7443 GCATTGAAGAGTGTTGG 7427 >seq519 Length=137297 Score = 93.3 bits (102), Expect = 5e-13 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCC 1574066 |||||||||| ||||| |||||| | |||| |||| | ||| ||||| | Sbjct 90629 TCGACGTCGTACGCAACCGTATCAAGGGCTTCGCCCAGAAGAAAGT-GACGCTGCCCCAA 90687 Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 || ||||| ||| | |||| ||||||||||||||| || | ||||| | ||||| || Sbjct 90688 GGGCGCCAAAAGCTTGTCATTCTCGACGAGGCCGACAGCATGACGTCTGGTGCCCAACAA 90747 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 |||||||| ||||||||| | || | || || ||||| || | |||||||| Sbjct 90748 GCCCTGCGTCGCACCATGGAGATCTACTCTTCGACCACCCGCTTCGCATTCGCGTGCAAT 90807 Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTG 1574241 ||| | | |||||||| |||| || || || ||||| |||||| || Sbjct 90808 CAGTCAAACAAGATCATCGAGCCCCTGCAGTCACGTTGTGCCATCTTGCGCTATG 90862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106991975958698