Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq528 93.3 1e-13 seq790 87.8 4e-12 >seq528 Length=17027 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||||||||| || || || ||| Sbjct 15079 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCCGAC 15138 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || || |||||||| || || || || ||| |||||| || Sbjct 15139 ACCATCGACAATGTGAAATCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 15198 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||| | || || || | || || |||| |||||| | Sbjct 15199 CGCCTGATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCCCTCTGTCCGACTACAACATT 15258 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||||||| Sbjct 15259 CAGAAGGAGTCGACTCTTCAC 15279 >seq790 Length=49868 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| || || || |||| Sbjct 29531 AAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGATACTATCGACAAT 29590 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| |||||| || | || |||||| Sbjct 29591 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTGATCTTC 29650 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | | ||||||||| ||||||| ||||| Sbjct 29651 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAACATCCAGAAGGAGTCC 29710 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || |||||||||| Sbjct 29711 ACCCTTCACTTGGTCCTGAGACTTCG 29736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181793635110274