Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq528 149 2e-30 seq477 118 3e-21 seq724 84.2 7e-11 >seq528 Length=17027 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||| || || ||||| || ||||| || | Sbjct 15538 TTTGCATACCACCACGAAGACGGAGAACCAAATGCAGGGTCGACTCCTTCTGAATGTTGT 15479 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || || || || || || || || || || ||||| | Sbjct 15478 AGTCCGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGT 15419 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || |||||||| || | || || |||||||| | ||| |||| Sbjct 15418 CCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTATCAATGGTATCGGATG 15359 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| |||| ||||| || || || || || |||||||||||||| Sbjct 15358 ATTCCACCTCAAGCGTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTGCAT 15304 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||||||||| || |||||||| || || || || || || Sbjct 15762 CATACCACCCCGGAGGCGGAGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAGTC 15703 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || || || || || || || || || || ||||| || || Sbjct 15702 AGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGG 15643 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| || || |||| || || ||||| || | ||| || | || Sbjct 15642 TGGGATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTC 15583 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| |||||||||||| || || || || || || ||||| Sbjct 15582 GACTTCTAGCGTAATTGTCTTTCCGGTGAGGGTCTTAACGAAGATTTGCAT 15532 Score = 111 bits (122), Expect = 5e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || ||| || || || ||||| || | || | |||||| || | Sbjct 15966 CAAG-TGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGCTCAGCGTCCTCCCATCCTCGA 15908 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | ||| ||||| || || || || || || |||||||||| Sbjct 15907 GCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAA 15848 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || || || ||||| | || || | ||||| || || |||| ||||||| Sbjct 15847 TCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCTTTC 15788 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || || || ||||||||||| Sbjct 15787 CGGTCAAGGTCTTGACGAAAATCTGCAT 15760 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | || || || ||||| || || || || || || Sbjct 15078 CATACCACCGCGCAGACGAAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 15019 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| || || || ||||| ||||||||||| || || Sbjct 15018 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGG 14959 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||||| || || || || || || ||| || || || || || | ||| || | | Sbjct 14958 GGGAATTCCCTCCTTGTCTTGGATCTT-GCTCTTAACGTTGTCGATGGTATCGGACGACT 14900 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| || || Sbjct 14899 CGACCTCAAGGGTGATGGTCTTGCCAGT 14872 >seq477 Length=84057 Score = 118 bits (130), Expect = 3e-21 Identities = 218/320 (68%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186 ||||| ||||| || |||||||||||| | | | | ||| || || || |||| Sbjct 76421 CCATCCTCTCCGTAGATGAATTGAACAATGTCACCAAGAGAGTTCCTGACGGTTCCATCA 76480 Query 378187 TATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGA 378246 || | ||||| | |||||| || || || | || || || ||| |||||||||| Sbjct 76481 TACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACGTTGAATGTAACCAGTTTCG 76540 Query 378247 CTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAAT 378306 ||| || || || |||||||| | ||| |||||||| |||| ||||||||||| || Sbjct 76541 GCAGTCTTGACAGCGGTATCAATGAGACCCTCACGACCAGCCATGGCATGGAAGAAGAAC 76600 Query 378307 TCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAA 378366 |||| ||||| || || | | | || |||||| ||| || | | | || || Sbjct 76601 TCAGATGGAGTGAGACCTCTCAGGTACGAGTTCTCAACAAAGCCACGAGACTCGGGAGAG 76660 Query 378367 TCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTT 378426 | ||||| ||||| |||| || | || || | || || || | ||||| || || Sbjct 76661 TAATCATCCTTTGTGAAATGTGGCAGGGTGCGGTACTTGAATCCGAAAGGAATACGCTTA 76720 Query 378427 CCATCAACATTCTGTTGACC 378446 || |||||| ||| || || Sbjct 76721 CCCTCAACAGACTGCTGTCC 76740 Score = 84.2 bits (92), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| |||| || ||| || || | ||||| ||||| ||||||||||| Sbjct 75731 CGCGGCACACCAAGTGTGACGTTC---TTGGACGACACACCGGCAAAATGGAAAGTATTG 75787 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||| || || || || |||| || || ||||| || Sbjct 75788 AGCGTCATCTGCGTAGCAGGCTCACCGATAGATTGGGCGGCAAGAATACCGACCATCTCG 75847 Query 377578 CCAGGATTGACAATAGC 377594 || || ||||| | ||| Sbjct 75848 CCGGGGTTGACCAGAGC 75864 >seq724 Length=143787 Score = 84.2 bits (92), Expect = 7e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || || || || ||||||||||| Sbjct 12896 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 12837 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || ||||||||||| || || || || || || | || ||||| || Sbjct 12836 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 12777 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || | ||| || | || || ||||| || | ||||| || || Sbjct 12776 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 12733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515219570930582