Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 103_20[genbank_20GCA_5F000750895.1_202014-09-09] 1,794 sequences; 30,255,792 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq790 149 1e-30 seq724 125 2e-23 seq1648 120 7e-22 seq528 118 3e-21 >seq790 Length=49868 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||||||| | ||| || ||||| || || |||| |||||||| | | || Sbjct 29737 ACGAAGTCTCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGT 29678 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || ||||| || || || || Sbjct 29677 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATTCC 29618 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||| || || || | ||||| || | Sbjct 29617 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCACCTCAAG 29558 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || || | ||| | |||||| Sbjct 29557 GGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 29516 >seq724 Length=143787 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||| | ||||| || |||||||| ||||| ||||| Sbjct 12896 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 12837 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || ||||||||||||||||| ||| ||| ||| Sbjct 12836 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 12777 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || || |||| || || || | ||||| |||||||||||||| || || | ||| Sbjct 12776 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 12718 >seq1648 Length=4763 Score = 120 bits (132), Expect = 7e-22 Identities = 198/281 (70%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGA 7498 ||| |||||||||||||| | | ||||| || ||||| |||||| ||||| | Sbjct 4439 AACATTATATTTAATATTCGCTTTATTTTCAGG-ATTATTAGGTACAGCTTTTTCAGTCT 4381 Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 | || || ||||||||| || || ||| |||| ||| || | ||| ||| | | Sbjct 4380 TAATTAGATTAGAATTAAGTGGACCTGGTGTTCAA-TATATAGCAG--ATAATCAATTAT 4324 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||| || || || || ||| | |||||||||||||| | |||||||| | || Sbjct 4323 ATAATAGTATAATAACAGCACACGCCATCCTTATGATTTTCTTTATGGTTATGCCAGCTA 4264 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 |||| || || || || |||| || | || | | | || | |||||||||||| | Sbjct 4263 TGATTGGAGGATTTGGTAATTTTTTATTACCACTTTTAGTAGGGGGTCCTGATATGGCAT 4204 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || ||||||||||| |||||| |||| ||| Sbjct 4203 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCACCT 4163 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| || || |||||||| | |||||| || | |||||||| || || || | Sbjct 3758 TTCAGGATGTCCGAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCACCACCAGC 3817 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | ||||| || |||||||||||||||||||||||||| Sbjct 3818 AGCTTCAAAGAATGATGTATTAAAATTTCTATCAGTTAAAAC 3859 >seq528 Length=17027 Score = 118 bits (130), Expect = 3e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || |||| ||||| |||| | || | || || Sbjct 15059 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 15000 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 14999 TCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 14940 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || || | || || || | ||||| ||| Sbjct 14939 TGGATCTTGCTCTTAACGTTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATGGTC 14880 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 14879 TTGCCAGTCA 14870 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||| ||||| || || || || | ||||| |||| || || Sbjct 15296 CGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGGG 15237 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || ||||| || || || || ||||| || ||||| || Sbjct 15236 CGACCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCC 15177 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||||||||||| || | || || || || Sbjct 15176 TCCTTGTCCTGAATCTTCGATTTCACATTGTCGATGGTGTCGGACGACTCAACCTCCAAA 15117 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 15116 GTGATGGTCTTGCCAGT 15100 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || || || || || | ||||| || | || || Sbjct 15525 ACGAAGACGGAGAACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGT 15466 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || ||||| || || || || ||||| || |||||||| Sbjct 15465 GCGACCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACC 15406 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || || ||||| || || | |||||| || | Sbjct 15405 CTCCTTGTCCTGAATCTTCGACTTGACGTTATCAATGGTATCGGATGATTCCACCTCAAG 15346 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| |||||||||||||| | ||| || Sbjct 15345 CGTAATCGTCTTGCCCGTAAGAGTCTT 15319 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || || || |||| ||||| || | || || | ||||| Sbjct 15743 AGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 15684 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || ||||| || || || || ||||| ||| Sbjct 15683 TCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCT 15624 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || || | || || |||| ||| || ||| Sbjct 15623 TGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCTAGCGTAATTGTC 15564 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | |||||| Sbjct 15563 TTTCCGGTGAGGGTCTTAACGAAGATTTGCAT 15532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192503788925036