Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2510 354 8e-93 seq1537 127 2e-24 seq1071 120 3e-22 seq1847 102 8e-17 >seq2510 Length=23295 Score = 354 bits (392), Expect = 8e-93 Identities = 567/807 (70%), Gaps = 13/807 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||||| Sbjct 9129 ATCTGGCAGATGTACAAGAAGGCGGAAGCGTCTTTCTGGACTGCAGAGGAGATTGACCTC 9188 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | || | || ||| | |||||| | |||||| Sbjct 9189 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAATGACGATGAGCGCTACTTCATCTCC 9248 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||||| || ||||||||||| || ||||||| Sbjct 9249 CACGTTCTCGCTTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 9308 Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||| ||||| || | | ||||| || ||||||||||| || || ||| || Sbjct 9309 TTCAG-CAGCGAGGTTCAAATCCCAGAGGCCCGCTGCTTCTACGGTTTCCAAATCATGAT 9367 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 |||||| | ||| | || | || || |||||||||||| ||| | | | | Sbjct 9368 CGAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACAT---CAAGGAGCA 9424 Query 116932 GGAGAAGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || ||| | | | || || ||||||||||| || || ||| |||| ||||||| Sbjct 9425 GGCCCAGCGCACATACCTCTTCAATGCCATCGAGACCATCCCTTGCATCAAGAAGAAGGC 9484 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| | | |||||| | || || || |||| | | |||||||||| || Sbjct 9485 CGACTGGGCTGTCAGGTGGATCCAAGACAAGGATTCCACCTTTGCCCAGCGCCTGGTTGC 9544 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| ||||| ||||| ||||||| || ||| |||||| | || || |||||||| Sbjct 9545 CTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTCTATTTTCTGGCTCAA 9604 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || |||||| | ||||| |||||| |||||||||||||||| | || ||||| Sbjct 9605 GAAGCGTGGTCTCATGGCTGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGATGAGGG 9664 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||| || ||||| ||||| | || ||| ||| | || || || ||| | Sbjct 9665 TCTCCACACTGACTTCGCCTGCCTCCTCTTCTCGCACCTTAGACACCGCCCAAGCAAGCA 9724 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | ||| ||| || ||||||| || ||||| |||||||| ||| | || || || Sbjct 9725 GGCTGTCCAGGATGTCATCACCGAGGCTGTCGCGATCGAGCAAGAGTTCTTGACAGAGGC 9784 Query 117289 GCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 || || ||||| ||||| || | || | | |||| ||||||||| ||||||| Sbjct 9785 ACTCCCATGTGCG-CTGCTCGGCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCG 9843 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 ||||||||||||||||||| || | || ||| |||||| | ||||||| Sbjct 9844 TCGCCGACAGGCTGCTGCTTTCTCTCGGTAACGAGAAGTTCTACAAGTCTACCAACCCCT 9903 Query 117408 TGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | ||||||| ||| Sbjct 9904 TCGACTTCATGGAGAACATCTCCCTGG 9930 >seq1537 Length=49637 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || |||||||| || |||||| | || || || | || Sbjct 26615 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 26556 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||| || ||| |||||||| Sbjct 26555 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 26496 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 26495 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAAC 26436 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 26435 ATCCAGAAGGAGTCCACTCTTCA 26413 >seq1071 Length=16463 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| | || ||||| || |||| | | | | | ||| Sbjct 1954 TCACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATCGACAATGTTAAGA 1895 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| || ||| ||||||||||||| || |||| ||| || | Sbjct 1894 GCAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAGCAACGTCTGATCTTCGCCGGAA 1835 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | || || || |||| ||||||||| |||||||||||||||||||||| |||| || | Sbjct 1834 AGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCC 1775 Query 40892 A 40892 | Sbjct 1774 A 1774 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || || || | || ||||| | | Sbjct 1292 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCG 1233 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| || || ||||||||||| ||||||| Sbjct 1232 GATACCATCGATAACG-TCAAGTCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCA 1174 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||| ||||| || || | || || | || ||||| Sbjct 1173 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACTTTGTCTGATTACAA 1114 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| | ||||| || Sbjct 1113 CATCCAGAAGGAGTCCACATTACATCTTGT 1084 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || | | Sbjct 1748 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCT 1689 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || |||| ||||| |||||||| || |||||||| Sbjct 1688 GACACTATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 1629 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||||||||| ||| |||| || | ||||| || | |||||||||| Sbjct 1628 CAGCGCTTGATTTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTACAAC 1569 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || || || Sbjct 1568 ATTCAGAAGGAGTCGACTCTCCA 1546 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||| || |||| || || | | Sbjct 1064 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACCATTACTCTCGAGGTTGAGTCTTCA 1005 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| ||| |||| || || ||||| ||||| ||||||| Sbjct 1004 GACACCATTGACAACGTT-AAGTCAAAGATTCAGGATAAGGAGGGTATCCCACCGGACCA 946 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||||| || || | | | || || | ||||||||| Sbjct 945 GCAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGATGGGAGGACGCTGAGCGACTACAA 886 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| || || Sbjct 885 CATCCAGAAGGAGAGCACTCTTCA 862 >seq1847 Length=30800 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || | |||||||| ||||||||| | || ||||| || |||| | | Sbjct 17597 TTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATC 17656 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || || |||||||||| || || Sbjct 17657 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGCCTG 17716 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | ||||| || ||||||||||||||||||| Sbjct 17717 ATCTTTGCTGGCAAGCAGCTTGAGGATGGACGCACTCTTTCCGACTACAACATCCAGAAG 17776 Query 40879 G 40879 | Sbjct 17777 G 17777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515197696038640