Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1071 129 5e-25 seq1537 116 3e-21 seq1847 84.2 2e-11 >seq1071 Length=16463 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || ||||||||||| ||||||| |||||| |||||| Sbjct 1540 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCC 1599 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| | || | |||||||| || ||||| |||||||||||||| | Sbjct 1600 AACTGCTTGCCCGCGAAAATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 1659 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | ||| ||||| | || | || ||| Sbjct 1660 ATCTTCGACTTCACATTGTCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTG 1719 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||||||||| Sbjct 1720 CCAGTCAGGGTCTTGACGAAAATCTGCAT 1748 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| || || |||||||| ||||||| || | | |||||| Sbjct 855 CACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTC 914 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || |||||||| || || || || |||||||| || Sbjct 915 GAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTG 974 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| ||||| | || | |||||| | ||| ||||||| || | || || Sbjct 975 AATCTTTGACTTAACGTTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATGGTCTT 1034 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || |||||||||||||| Sbjct 1035 TCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || ||||||||||||||| || ||||| |||||| Sbjct 1312 ACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCC 1371 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || || |||||||| || Sbjct 1372 AGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGG 1431 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||| || | || | || ||||| | || | ||| || Sbjct 1432 ATCTTCGACTTCACGTTGTCAATGGTATCGGATGAT-TCCACCTCAAGCGTGATCGTCTT 1490 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||||||||| Sbjct 1491 CCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||| ||||| || || ||||||||||| || ||| || |||||||| Sbjct 1085 CAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCATCCTCGA 1144 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| | || || |||||||| || || || ||||||||||| ||| || Sbjct 1145 GCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGAA 1204 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||| |||| |||||| || | || | || || | Sbjct 1205 TCTTGGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTC 1264 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || || || || ||||| Sbjct 1265 CGGTGAGAGTCTTGACGAAGATTTGCAT 1292 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | ||||| ||||| Sbjct 1768 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 1827 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| ||| |||| ||||| ||||| || || || || |||||||||||| Sbjct 1828 AGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 1887 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | |||| || || | | ||||||||| | ||| | || ||| Sbjct 1888 ATCTTGCTCTTAACATTGTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTG 1947 Query 118710 CCGGT 118714 || || Sbjct 1948 CCAGT 1952 >seq1537 Length=49637 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | |||||| |||||||| | || ||||| || || |||||||| || Sbjct 26388 ACCTCCACGAAGTCTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 26447 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||||||||| || || ||| |||| || |||||||| || || || Sbjct 26448 AAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 26507 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| ||||| | ||| || Sbjct 26508 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCAC 26567 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||| | ||| | || ||||| ||||| || || || || || |||||| || Sbjct 26568 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGACT 26619 >seq1847 Length=30800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | |||||| |||||| ||||| || ||||| |||| Sbjct 17775 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 17716 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || ||||| || ||||||||||| || || || || | ||| Sbjct 17715 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 17656 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | || || | | ||||||||| | ||| | || ||||| |||| || || || || Sbjct 17655 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 17597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433812745678588