Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1537 109 6e-19 seq1071 107 2e-18 >seq1537 Length=49637 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||| || | ||| |||||| || || ||||| || | || || || | || Sbjct 26403 CAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 26462 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| || ||||| || || ||||||||||| | || | | ||||||||| Sbjct 26463 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 26522 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || |||| | | | |||||| ||| ||||| || | ||||| || Sbjct 26523 CTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGT 26582 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| || ||||||||||| Sbjct 26583 CTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 26615 >seq1071 Length=16463 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 ||||||| || || | | ||| | |||||| || | ||||||||||| || || |||| Sbjct 830 CCTATTGGCCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGT 889 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || ||| |||| | | || || |||||||| || ||||| || || |||||||||| Sbjct 890 AGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGT 949 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127 | | || | | |||||| ||| ||| | |||| | | ||| | | | ||||| Sbjct 950 CCGGTGGGATACCCTCCTTATCC-TGAATCTTTGACTTAACGTTGTCAATGGTGTCTGAA 1008 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| || ||||| || || || | ||||| ||||| || ||||| Sbjct 1009 GACTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| ||||| |||||||| | || || || | Sbjct 1305 ACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCC 1364 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || || || ||||||||||| | || | | |||||| Sbjct 1365 ATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTT 1424 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || || | ||| | | | || ||| |||||||| || | ||||| Sbjct 1425 ATCCTGGATCTTCGACTTCA-CGTTGTCAATGGTATCGGATGATTCCACCTCAAGCGTGA 1483 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || ||||| || ||||| || || || ||||| Sbjct 1484 TCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| |||||| |||||| || || |||||||||| || ||| || | || || ||||| Sbjct 1089 ATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCATCCTCGAGCTG 1148 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || ||||| || || ||||||||||| | || | || |||||| | | ||| | | Sbjct 1149 CTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTAT-CTTGAATCT 1207 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | |||| | | | || || ||| || || || | ||| || || || || | Sbjct 1208 TGGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGG 1267 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || ||||||||||| Sbjct 1268 TGAGAGTCTTGACGAAGATTTGCAT 1292 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || |||||| || | || || | |||||| || ||||| Sbjct 1557 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1616 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||| | || | || |||||||||| ||| | || | || | Sbjct 1617 AATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 1675 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||| || || || | |||||||| ||||| || || ||||| | Sbjct 1676 TGTCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGA 1735 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 1736 CGAAAATCTGCAT 1748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571793733762920