Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1537 109 6e-19
seq1071 107 2e-18
>seq1537
Length=49637
Score = 109 bits (120), Expect = 6e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
||| ||||| || | ||| |||||| || || ||||| || | || || || | ||
Sbjct 26403 CAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 26462
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| |||||||| || ||||| || || ||||||||||| | || | | |||||||||
Sbjct 26463 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 26522
Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
| ||| || |||| | | | |||||| ||| ||||| || | ||||| ||
Sbjct 26523 CTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGT 26582
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||||| || ||||| || |||||||||||
Sbjct 26583 CTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 26615
>seq1071
Length=16463
Score = 107 bits (118), Expect = 2e-18
Identities = 167/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008
||||||| || || | | ||| | |||||| || | ||||||||||| || || ||||
Sbjct 830 CCTATTGGCCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGT 889
Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068
| || ||| |||| | | || || |||||||| || ||||| || || ||||||||||
Sbjct 890 AGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGT 949
Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127
| | || | | |||||| ||| ||| | |||| | | ||| | | | |||||
Sbjct 950 CCGGTGGGATACCCTCCTTATCC-TGAATCTTTGACTTAACGTTGTCAATGGTGTCTGAA 1008
Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || |||| || ||||| || || || | ||||| ||||| || |||||
Sbjct 1009 GACTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064
Score = 105 bits (116), Expect = 8e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| |||| || |||||| ||||| |||||||| | || || || |
Sbjct 1305 ACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCC 1364
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||||||||| || || || ||||||||||| | || | | ||||||
Sbjct 1365 ATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTT 1424
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
||| ||| || || | ||| | | | || ||| |||||||| || | |||||
Sbjct 1425 ATCCTGGATCTTCGACTTCA-CGTTGTCAATGGTATCGGATGATTCCACCTCAAGCGTGA 1483
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || ||||| || ||||| || || || |||||
Sbjct 1484 TCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520
Score = 96.9 bits (106), Expect = 4e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039
||| |||||| |||||| || || |||||||||| || ||| || | || || |||||
Sbjct 1089 ATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCATCCTCGAGCTG 1148
Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
||| || ||||| || || ||||||||||| | || | || |||||| | | ||| | |
Sbjct 1149 CTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTAT-CTTGAATCT 1207
Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158
| | |||| | | | || || ||| || || || | ||| || || || || |
Sbjct 1208 TGGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGG 1267
Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183
| || ||||| || |||||||||||
Sbjct 1268 TGAGAGTCTTGACGAAGATTTGCAT 1292
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || |||||| || | || || | |||||| || |||||
Sbjct 1557 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1616
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| | ||||||||||| | || | || |||||||||| ||| | || | || |
Sbjct 1617 AATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 1675
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| ||| || || || | |||||||| ||||| || || ||||| |
Sbjct 1676 TGTCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGA 1735
Query 43171 CAAAGATTTGCAT 43183
| || || |||||
Sbjct 1736 CGAAAATCTGCAT 1748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571793733762920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |