Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1479 118 2e-21 seq2510 109 1e-18 >seq1479 Length=10203 Score = 118 bits (130), Expect = 2e-21 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||| |||||||| ||||| || || ||| || || ||||| |||||| Sbjct 6749 CCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATACCC 6690 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGG-GTGTGACTGT 94904 ||||| ||||| || | | | | | | |||||| || || || |||| |||| ||| Sbjct 6689 TCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCCTGTG-GTGT 6631 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || ||||| ||||| || || || || || | |||||||| | || Sbjct 6630 ACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 6571 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| |||||| | | || || ||||||||||| || ||||||||||||||||| Sbjct 6570 TGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAATGCCAACCGCCACACGCATAATCAT 6511 Query 95025 GTCCTGAGG 95033 || ||| || Sbjct 6510 GTGCTGTGG 6502 >seq2510 Length=23295 Score = 109 bits (120), Expect = 1e-18 Identities = 334/510 (65%), Gaps = 10/510 (2%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCA---ATAACGATTTGGC 101907 |||||||||||||| | |||||| | | ||||| ||| || || | || || Sbjct 9470 CATCAAGAAGAAGGCCGACTGGGCTGTCAGGTGGATCCAAGACAAGGATTCCACCTTTGC 9529 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 | | | |||||||| ||||| ||||| || |||||||| || | ||||| || Sbjct 9530 CCAGCGCCTGGTTGCCTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTC 9589 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||||||||| ||||||| | ||| | || |||| ||||| | |||||| ||| |||| Sbjct 9590 TATTTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGCCTCACTTTCTCCAACGAGCTCAT 9649 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 || | || || ||||| || ||||| || ||| | || || | || | Sbjct 9650 CTCCCGCGATGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTCTCGCA--CCTTAGA 9707 Query 102088 TGATACCCCATCAAG-AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 ||| | |||| || | | | || | |||| || || ||| || || | Sbjct 9708 CACCGCCCAAGCAAGCAGGCTG--TCCAGGATGTCATCACCGAGGCTGTCGCGATCGAGC 9765 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206 |||| || | |||| | || || | | | || |||||| ||| ||||||| Sbjct 9766 AAGAGTTCTTGACAGAGGCACTCCCATGTGCGCTGCTCGGCATGAACGCCAACTTGATGA 9825 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266 || |||||||| || || || || | || || || | || || ||| || Sbjct 9826 AGCAATACATTGAGTTCGTCGCCGACAGGCTGCTGCTTTCTCTCGGTAACGAGAAGTTCT 9885 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCG-AGAATAAGACCAAC 102325 | || ||||||||||||| |||||||| || || ||||| | || | ||||||||| Sbjct 9886 ACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGCAGGA-AAGACCAAC 9944 Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 || ||||| ||| | |||||||| || ||| Sbjct 9945 TTCTTTGAGAAGCGTGTCGCCGACTACCAA 9974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989541664668745