Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1479 96.9 3e-15 >seq1479 Length=10203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 374/585 (64%), Gaps = 2/585 (0%) Strand=Plus/Minus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 ||||| || |||||| || ||||| |||| ||| || | | || || || || | | Sbjct 7079 AATCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTC 7020 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTT 38084 || || | ||| || | ||| | || ||| || || || || | ||| || || Sbjct 7019 ATGAAGAGATCCGGGATCCAGAGAGC-GTAGAACAAGTCACGGGCACGGACTTCCTCCTT 6961 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || ||||| || ||| | || ||||| | ||||||||||||||| || | ||| Sbjct 6960 GCCGTGGTTCTTCCTCAAGTCCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACATA 6901 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 || | | || || || | || | || ||||| | || ||||| | ||||| || Sbjct 6900 GATGGCGAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTT 6841 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | | | ||| || || ||||| || || || ||||| |||||| || || | Sbjct 6840 GAAGACGCGGAGCATGGGAACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGC 6781 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 ||| | || || ||| | || |||||| || || || ||| ||||| || | Sbjct 6780 ACCGGTGGCACGGATACGATGGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCAT 6721 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 || ||| || | || ||| | ||||| || ||||| || ||||| || | | Sbjct 6720 GGCACATGTCTTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAA 6661 Query 38385 AAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 || || |||| || | | ||| || || || || || | ||| || || || || Sbjct 6660 GAAGCAGGATGACAGCTGGGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTG 6601 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 | |||| |||| |||| || ||||| || || | | || ||||| |||| Sbjct 6600 TGTGAAGTATTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCC 6541 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||| || | | || | ||| | ||| || ||||| ||||| Sbjct 6540 GTGAATGCCAACCGCCACACGCATAATCATGTGCTGTGGCCTTTC 6496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468505244946160