Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2510 170 3e-37 seq1479 109 8e-19 >seq2510 Length=23295 Score = 170 bits (188), Expect = 3e-37 Identities = 386/578 (67%), Gaps = 7/578 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| | || || || ||||| | || ||| | || || Sbjct 9129 ATCTGGCAGATGTACAAGAAGGCGGAAGCGTCTTTCTGGACTGCAGAGGAGATTGACCTC 9188 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | ||| | | ||| |||||| | || || || Sbjct 9189 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAATGACGATGAGCGCTACTTCATCTCC 9248 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | || ||||| |||| || || ||||| |||||||| || || | || Sbjct 9249 CACGTTCTCGCTTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 9308 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || ||||||| ||||| ||||| |||||||||||||| Sbjct 9309 TTCAGCAGCGAGGTTCAAATCCCAGAGGCCCGCTGCTTCTACGGTTTCCAAATCATGATC 9368 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG--- 125315 |||||| | ||| | || | ||||| || || |||| ||||| || | | Sbjct 9369 GAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAGGCC 9428 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 || || | | || ||||| || || ||||| || | || | || || ||||| Sbjct 9429 CAGCGCACATAC---CTCTTCAATGCCATCGAGACCATCCCTTGCATCAAGAAGAAGGCC 9485 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | |||||||| | ||| | | || | | ||| | | ||||| || Sbjct 9486 GACTGGGCTGTCAGGTGGATCCAAGACAAGGATTCCACCTTTGCCCAGCGCCTGGTTGCC 9545 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| ||||| ||||| |||||||| || || || || | || || ||||||||| Sbjct 9546 TTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTCTATTTTCTGGCTCAAG 9605 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||| | || || || | |||||| | || || || || ||||| Sbjct 9606 AAGCGTGGTCTCATGGCTGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGATGAGGGT 9665 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT 125592 || ||| |||||| ||| || || || ||||| || Sbjct 9666 CTCCACACTGACTTCGCCTGCCTCCTCTTCTCGCACCT 9703 >seq1479 Length=10203 Score = 109 bits (120), Expect = 8e-19 Identities = 313/475 (66%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| ||||| ||||| || || || || || | ||| |||| | || || | Sbjct 6854 GATACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTCGCCATCTATGTTGAGCCAT 6913 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || || || || | || || | || ||| ||| || || | | Sbjct 6914 GGCACGCTGATGTCTTCGAGTTCTTGGACTTGAGGAAGAACCACGGCAAGGAGGAAGTCC 6973 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CA 97041 | ||| | |||||||| || || |||||| | || ||| | ||||||||||| || | Sbjct 6974 GTGCCCGTGACTTGTTCTACGCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGAGA 7033 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | |||||| |||||| || ||||||||| || | || || || | || | Sbjct 7034 AGAACGGTG---ACTGGACTCTCATGTGCCCCAACGAATGCCCTGGATTGGCGGACGTTT 7090 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAG-GGCCGATACGTGAGA 97160 || || ||||| ||||| ||| | |||||| ||| | | || ||| Sbjct 7091 ACGGTGATGAGTTCGAGGCTCTCTACGAGAAATACGAGTCGGAGAAGAAGGGTCGCAAGA 7150 Query 97161 CGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | | || | || | |||| || ||| | |||| | | ||||| ||||| |||| Sbjct 7151 CCA-TCAAGGC-CCAGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAGGAAA 7208 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| | ||||||||| | || ||||| |||||||| || | || || Sbjct 7209 CCCTTTCATGTTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTAC 7268 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| |||| || ||||||||||| ||||| |||||| | |||| || ||| Sbjct 7269 CATCCGCAGCTCTAACCTGTGCACGGAGATTGTCGAGTACTCTGCTCCAGATGAG 7323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741028270041640