Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1071 89.7 4e-13 >seq1071 Length=16463 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCT 48575 ||| || ||||| ||||||||||| || |||||||| || || | ||| | | |||| Sbjct 855 CACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGCGTCCTCCCATCCT 913 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || | || | |||||||| ||| || | || ||||| ||| Sbjct 914 CGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCT 973 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | ||||| || | |||||| ||||| || ||||| | Sbjct 974 GAATCTTTGACTTAACGTTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATGGTCT 1033 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | || || |||||||||||||| Sbjct 1034 TTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||| | ||| || | ||||||||||||||||| | | Sbjct 1329 CTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAA 1388 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||| ||| || ||| ||| | Sbjct 1389 GATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGGATCTTCGACTTCACGTT 1448 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||||| || ||| ||| | || || || || || || ||||| || || Sbjct 1449 GTCAATGGTATCGGATGATTCCACCTCAAGCGTGATCGTCTTCCCCGTAAGAGTCTTGAC 1508 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 1509 GAAAATCTGCAT 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421234057577339