Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1479 187 3e-42 seq2510 131 2e-25 >seq1479 Length=10203 Score = 187 bits (206), Expect = 3e-42 Identities = 567/866 (65%), Gaps = 14/866 (2%) Strand=Plus/Minus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||||| ||||||| ||||| ||||| ||||||| | | | | || | | ||||| Sbjct 7353 GGCAAGGGATGCCAAGTTACACACGGCAACCTCATCTGGAGCAGAGTACTCGACAATCTC 7294 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 ||||| || ||| | ||| || || | || | || || ||||| ||| || Sbjct 7293 CGTGCACAGGTTAGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 7234 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||||| || | ||||| || | || || ||| ||||||| || | ||| | | Sbjct 7233 AGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTA 7174 Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT-TTCTCTT--TCGTATAGT- 63125 ||| | | || | ||||| || | ||| | | | ||||| |||||| Sbjct 7173 CCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGACCCTTCTTCTCCGACTCGTATTTCT 7118 Query 63126 -GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 63184 ||| | | | |||||||| || || |||| | |||||||||| ||||| | || Sbjct 7117 CGTAGAGAGCC--TCGAACTCATCACCGTAAACGTCCGCCAATCCAGGGCATTCGTTGGG 7060 Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63244 ||||| | | ||| || |||| | || || || ||||| |||||||| || ||||| Sbjct 7059 GCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCA 7000 Query 63245 AAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 ||||| || || || || | || | |||||| || || ||||| | | | Sbjct 6999 GAGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGT 6941 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 | | |||| | | | ||||| ||||| || || | || ||||| | | ||||| | Sbjct 6940 CCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACATAGATGGCGAAGGCACCAGGGC 6881 Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423 | ||||| || ||||| || | |||||| || ||||| || | || | | ||| |||| Sbjct 6880 GCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAA 6821 Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483 |||||||| || | || |||||||||| || || || ||||||| ||| | Sbjct 6820 CGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGAT 6761 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543 || | || || || || || | || ||||| | || ||| || | |||| Sbjct 6760 GGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGT 6701 Query 63544 CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63603 ||||||||||||| || ||||| || |||||| | | || ||| |||| ||| Sbjct 6700 CATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGG 6641 Query 63604 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63663 | || || ||||| || | || || || ||||| || || |||| ||| | Sbjct 6640 CCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACA 6581 Query 63664 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63723 || ||||| |||||||| || || |||||| ||||| || || || |||| Sbjct 6580 TGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAATGCCAACCGCCACAC 6521 Query 63724 GCATTAACATGTGCTGAGGTCTTTCA 63749 |||| | ||||||||| || |||||| Sbjct 6520 GCATAATCATGTGCTGTGGCCTTTCA 6495 >seq2510 Length=23295 Score = 131 bits (144), Expect = 2e-25 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||| |||||||| || | || || |||||||| || ||||| Sbjct 9685 CAGGCGAAGTCAGTGTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 9626 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || | ||| || |||||||| || ||||| || || || ||||| || || || |||||| Sbjct 9625 CCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAG 9566 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 33480 || || || || ||||| ||||||| || | || || | || | |||| || Sbjct 9565 ATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTTGTCTTGG 9506 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||| | |||||| ||||||||||| || | ||||| || || || |||||||| Sbjct 9505 ATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTG 9446 Query 33541 AAGAGATA 33548 ||||| || Sbjct 9445 AAGAGGTA 9438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622921199741240