Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1424 107 4e-18
seq340 93.3 9e-14
seq1479 87.8 4e-12
>seq1424
Length=20645
Score = 107 bits (118), Expect = 4e-18
Identities = 126/168 (75%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||||| || ||||| || ||||||| ||||| | ||||| || ||||
Sbjct 16258 CCAACTTCGGTCTCGATGCCGAGCTTGTTTCTCACTCCCGCATGCTGGGTCTCTCCGGAG 16199
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| | ||| ||| || |||| |||||| | |||||| ||||||||
Sbjct 16198 GTCAGCGTGTCAAGGTCGTCCTCGCCGCCTGCTC-GTGGCAGCGTCCTCACTTGATCGTT 16140
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838
|| || |||||||||||||| |||||||| || |||||| ||||||
Sbjct 16139 CTTGATGAGCCTACCAACTACCTGGACCGTGACTCCCTGGGAGCTCTG 16092
>seq340
Length=19069
Score = 93.3 bits (102), Expect = 9e-14
Identities = 137/189 (72%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233
||||||| || ||||| || |||||||| || ||||| ||||||||||||||| ||
Sbjct 8085 TCATTGGTGGTAACGGTGCCGGAAAGTCTACGCTCATCAAGCTCCTGACTGGCGAGA-CC 8143
Query 280234 AGGCCACTGAGGGGTCCGT-TTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291
| ||| | || |||| ||| |||||| |||||| |||| || | ||| | ||
Sbjct 8144 ATCCCAACCACTGG-CCGTGTTGAGAAGCACCCCAACTTGCGTATCGGATACATTAAGCA 8202
Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351
|||||| | | ||| | |||| || || || | ||| || ||||| ||| | |||||
Sbjct 8203 GCACGCCCTTGAGCACGTTGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTCCAGTG 8262
Query 280352 GCGCTATGC 280360
|||||| ||
Sbjct 8263 GCGCTACGC 8271
>seq1479
Length=10203
Score = 87.8 bits (96), Expect = 4e-12
Identities = 185/271 (68%), Gaps = 15/271 (6%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGA---GGTCAATCACTGTCTTCAT 293171
||| | |||||||| ||||||||||| ||||| || | || |||| || |
Sbjct 8124 CTGGGACTGATCGATGAAGGCACCACGGTCAGCGGCCATCTGGACAATG---GTGCGCTG 8068
Query 293172 AGAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTT 293231
||||||||||| |||||||| | ||||||| ||| | | ||| | ||
Sbjct 8067 GGAGATCTCCCAGACCGTCTTGTAGAGAGCCTTGATATCGGCCGGGATGTTGGGGATGTT 8008
Query 293232 CTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCA- 293289
|||||| || ||||||| ||||| || |||||||||| | || ||||| |||||||
Sbjct 8007 CTGGATGGATCCTCCGTCCGCAATGATGCGGTTCTTCATGTTGTCAGACCACAGTCCCAT 7948
Query 293290 --CGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAG 293347
||| ||| || || | ||| ||||||||| ||||||||||||| ||
Sbjct 7947 GTCGACCAAG----TCTTTGAGCAACCAAGGGTTGACAACTTGGAACTCACCAGCCAGGA 7892
Query 293348 TGCGACGGCTGTAAATGTTCGAAGTG-ATGG 293377
|| || ||| |||||||| ||| ||||
Sbjct 7891 CACGGCGCGAGTAGATGTTCGAGGTGTATGG 7861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027792828178099
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |