Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1424 107 4e-18 seq340 93.3 9e-14 seq1479 87.8 4e-12 >seq1424 Length=20645 Score = 107 bits (118), Expect = 4e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| || ||||| || ||||||| ||||| | ||||| || |||| Sbjct 16258 CCAACTTCGGTCTCGATGCCGAGCTTGTTTCTCACTCCCGCATGCTGGGTCTCTCCGGAG 16199 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| ||| || |||| |||||| | |||||| |||||||| Sbjct 16198 GTCAGCGTGTCAAGGTCGTCCTCGCCGCCTGCTC-GTGGCAGCGTCCTCACTTGATCGTT 16140 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || || |||||||||||||| |||||||| || |||||| |||||| Sbjct 16139 CTTGATGAGCCTACCAACTACCTGGACCGTGACTCCCTGGGAGCTCTG 16092 >seq340 Length=19069 Score = 93.3 bits (102), Expect = 9e-14 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| || ||||| || |||||||| || ||||| ||||||||||||||| || Sbjct 8085 TCATTGGTGGTAACGGTGCCGGAAAGTCTACGCTCATCAAGCTCCTGACTGGCGAGA-CC 8143 Query 280234 AGGCCACTGAGGGGTCCGT-TTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 | ||| | || |||| ||| |||||| |||||| |||| || | ||| | || Sbjct 8144 ATCCCAACCACTGG-CCGTGTTGAGAAGCACCCCAACTTGCGTATCGGATACATTAAGCA 8202 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||| | | ||| | |||| || || || | ||| || ||||| ||| | ||||| Sbjct 8203 GCACGCCCTTGAGCACGTTGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTCCAGTG 8262 Query 280352 GCGCTATGC 280360 |||||| || Sbjct 8263 GCGCTACGC 8271 >seq1479 Length=10203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 185/271 (68%), Gaps = 15/271 (6%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGA---GGTCAATCACTGTCTTCAT 293171 ||| | |||||||| ||||||||||| ||||| || | || |||| || | Sbjct 8124 CTGGGACTGATCGATGAAGGCACCACGGTCAGCGGCCATCTGGACAATG---GTGCGCTG 8068 Query 293172 AGAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTT 293231 ||||||||||| |||||||| | ||||||| ||| | | ||| | || Sbjct 8067 GGAGATCTCCCAGACCGTCTTGTAGAGAGCCTTGATATCGGCCGGGATGTTGGGGATGTT 8008 Query 293232 CTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCA- 293289 |||||| || ||||||| ||||| || |||||||||| | || ||||| ||||||| Sbjct 8007 CTGGATGGATCCTCCGTCCGCAATGATGCGGTTCTTCATGTTGTCAGACCACAGTCCCAT 7948 Query 293290 --CGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAG 293347 ||| ||| || || | ||| ||||||||| ||||||||||||| || Sbjct 7947 GTCGACCAAG----TCTTTGAGCAACCAAGGGTTGACAACTTGGAACTCACCAGCCAGGA 7892 Query 293348 TGCGACGGCTGTAAATGTTCGAAGTG-ATGG 293377 || || ||| |||||||| ||| |||| Sbjct 7891 CACGGCGCGAGTAGATGTTCGAGGTGTATGG 7861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027792828178099