Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1847 98.7 1e-15 seq1537 96.9 3e-15 seq1071 95.1 1e-14 >seq1847 Length=30800 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | | ||||| | || |||||||||||||| ||| | || Sbjct 17775 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 17716 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| ||||||||||| || || || || || || ||| ||| || Sbjct 17715 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 17656 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| || || || || | || | ||||||||| ||||| || || ||||| Sbjct 17655 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 17597 >seq1537 Length=49637 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | | |||||| | || || |||||| Sbjct 26413 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGC 26472 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | || || ||||||||||| || |||||||| || || || || || || Sbjct 26473 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 26532 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || || | ||||| || | || | |||||||| ||| Sbjct 26533 GACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTC 26592 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| |||||||| Sbjct 26593 AGGGTCTTCACGAAGATTTGCAT 26615 >seq1071 Length=16463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | ||||| | || || | ||||||||| Sbjct 1552 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAACTGCTTGCCC 1611 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | ||||||||||| |||||||| || || || || || || || ||| Sbjct 1612 GCGAAAATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTC 1671 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| | || || || | ||| | ||||||||| |||| || Sbjct 1672 ACATTGTCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTC 1731 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 1732 TTGACGAAAATCTGCAT 1748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || ||||||||||| | | || || | || Sbjct 1081 AGAACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCATCC 1140 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| || ||||||||||| || || || || || || ||| Sbjct 1141 TCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCT 1200 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || || ||| || || | |||| ||| || || ||||| | || | | Sbjct 1201 TGAATCTTGGACTTGACGTTATCGATGGTAT--CCGACGACTCGACTTCCAGCGTAATTG 1258 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||||| | ||| || ||||| |||||||| Sbjct 1259 TCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1292 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||||||||| | | |||||| | || || |||||||| || Sbjct 1324 GTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCCAGCTGCTTACCA 1383 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| || || || || || || || || || || ||| Sbjct 1384 GCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGGATCTTCGACTTC 1443 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||||| | ||||| || | || | ||||| || || | ||| Sbjct 1444 ACGTTGTCAATGGTATCGGATGATTCCACCTCAAGCGTGATCGTCTTCCCCGTAAGAGTC 1503 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 1504 TTGACGAAAATCTGCAT 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499623946075160