Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1071 120 3e-22 seq2510 113 4e-20 seq1537 91.5 1e-13 >seq1071 Length=16463 Score = 120 bits (132), Expect = 3e-22 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || | | |||||||| || || |||| | Sbjct 873 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAA 932 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| || ||||| |||||||| || ||||| || || || ||| | |||| |||| | Sbjct 933 GATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATC-CTGAATCTTTGACTTAACGT 991 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||| ||||||| || | || || ||||||| || || Sbjct 992 TG-TCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTG 1050 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 1051 ACAAAAATCTGCAT 1064 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| || || | | |||||||| ||||||||||| ||| | Sbjct 1294 CCACCACGCAGACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGAC 1353 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | | |||| || ||||| |||||||| || Sbjct 1354 AAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 1413 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| || || | | || | ||| |||| || |||||| Sbjct 1414 ATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCAATGGTATCGGATGATTCCACC 1473 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || || ||||| || || ||||||||||| Sbjct 1474 TCAAGCGTGATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| ||| || ||||| | || || || | Sbjct 1555 GACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAACTGCTTGCCCGCG 1614 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || | ||||| ||||||||||| || || || ||||| ||| | || | || Sbjct 1615 AAAATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTCAC 1673 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | |||||| ||||| | || | || || |||||||| || | Sbjct 1674 ATTG-TCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCT 1732 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 1733 TGACGAAAATCTGCAT 1748 >seq2510 Length=23295 Score = 113 bits (124), Expect = 4e-20 Identities = 493/765 (64%), Gaps = 29/765 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 || || || |||||||| || ||| ||||| | || ||||||||||| | || | Sbjct 9222 AATGACGATGAGCGCTACTTCATCTCCCACGTTCTCGCTTTCTTCGCCGCGTCTGACGGA 9281 Query 52146 ATCGTGAACATTAACCTCATCGAGTACAT--GCAGCGGAACGTTCCGGAACTC---GAGG 52200 || || ||| |||||| ||||| | | |||||| | |||| || || |||| Sbjct 9282 ATTGTCAACGAGAACCTCCTCGAGCGCTTCAGCAGCG--AGGTTC---AAATCCCAGAGG 9336 Query 52201 CGCAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATC 52260 | | | ||| || ||| ||| | | |||||| | | ||| | |||| ||| | Sbjct 9337 CCCGCTGCTTCTACGGTTTCCAAATCATGATCGAGAACATTCACGCCGAGACATACTCCC 9396 Query 52261 TGCTCATTGAGCAGCT-GATAAAAGATGAGCACGAGCGCGACA-CGCTGCTGAATGCGTT 52318 | ||||| || || | || || || || | ||||| ||| || | ||||| | Sbjct 9397 TCCTCATCGA-CACATACATCAAGGAGCAGGCCCAGCGC-ACATACCTCTTCAATGCCAT 9454 Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378 |||| | | || ||| | || ||||| | ||||| | | ||||||| | || Sbjct 9455 CGAGACCATCCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGGTGGATCCA---AGA 9511 Query 52379 CACCG---CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttt 52435 || | |||| | ||| ||||| |||| |||||||| || ||||| | || || Sbjct 9512 CAAGGATTCCACCTTTGCCCAGCGCCTGGTTGCCTTCGCTGCCGTTGAGGGTATCTTCTT 9571 Query 52436 ttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGAC 52495 |||||| || ||| | || || | | || | | || | ||| | ||||| || Sbjct 9572 CTCCGGCTCGTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGCCTCAC 9631 Query 52496 GTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTA 52555 ||| ||||||| | || || ||||| || || || ||||| ||||| || |||||| Sbjct 9632 TTTCTCCAACGAGCTCATCTCCCGCGATGAGGGTCTCCACACTGACTTCGCCTGCCTCCT 9691 Query 52556 CTACAAG-ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGT--TCAA 52612 || | | || | |||| || | | | | | ||| || |||| ||| Sbjct 9692 CTTCTCGCACCTTAGACACCGCCCAA--GCA--AGCAGGCTGTCC--AGGATGTCATCAC 9745 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 ||||| || || ||||| | ||||| || || | || || || | |||||| || Sbjct 9746 CGAGGCTGTCGCGATCGAGCAAGAGTTCTTGACAGAGGCACTCCCATGTGCGCTGCTCGG 9805 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||||| | | ||| | ||||| ||||| || || || | ||| || | Sbjct 9806 CATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGACAGGCTGCTGCTTTC 9865 Query 52733 GCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 ||||| | |||| || ||| || ||| || || || || ||| | ||||| || Sbjct 9866 TCTCGGTAACGAGAAGTTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTC 9925 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | || ||||||||||| || |||||||| |||| ||| || Sbjct 9926 CCTGGCAGGAAAGACCAACTTCTTTGAGAAGCGTGTCGCCGACTA 9970 >seq1537 Length=49637 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||| || || |||| Sbjct 26422 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 26481 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 26482 AAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 26541 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||||||| |||||||||||| | || | || || || ||||| || || Sbjct 26542 TTGT-CGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTT 26600 Query 138600 TACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 26601 CACGAAGATTTGCATGACT 26619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496241687248080