Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1071 116 4e-21 seq1537 98.7 9e-16 >seq1071 Length=16463 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || ||||| ||||| |||| | Sbjct 1522 CCACCACGAAGACGAAGGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1581 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || || ||| | ||||| |||||||| || ||||| Sbjct 1582 AGAGTGCGACCATCCTCCAACTGCTTGCCCGCGAAAATCAAGCGCTGCTGGTCCGGAGGA 1641 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||| | | |||| ||||| | ||| || Sbjct 1642 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATAGTGTCAGACGACTCAACC 1701 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || ||||||||||| Sbjct 1702 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 1748 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || ||||| ||||||||| | Sbjct 1294 CCACCACGCAGACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGAC 1353 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| |||||||| || || || Sbjct 1354 AAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 1413 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| ||| ||| ||| ||| | ||||| | | ||| || | || || Sbjct 1414 ATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGT-CAATGGTATCGGATGATTCCAC 1472 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || || || ||||| || || ||||||||||| Sbjct 1473 CTCAAGCGTGATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||| || || || ||||| |||| | Sbjct 838 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 897 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | ||| || ||||| || || ||| |||||| |||||||| || || || Sbjct 898 AGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 957 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||| ||| ||| | | || ||| | ||||| | | |||||| | | ||| | Sbjct 958 ATACCCTCCTTATCC-TGAATCTTTGACTTAACGTTGT-CAATGGTGTCTGAAGACTCAA 1015 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || || || |||| || || |||||||||||||| Sbjct 1016 CCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || | ||||| || ||||| || || || |||||||| | Sbjct 1066 CCACCACGGAGGCGGAGAACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGAC 1125 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| | |||| |||||||| || || || Sbjct 1126 AAAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGG 1185 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| || || || ||||| | |||| ||| |||| ||||||| Sbjct 1186 ATGCCCTCCTTATCTTGAATCTTGGACTTGACGTTATCGATGGTATCCGACGACTCGACT 1245 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| ||||| || || || || ||||| Sbjct 1246 TCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1292 >seq1537 Length=49637 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || || || | || ||| ||||| || | || ||||| || || || ||||| || Sbjct 26386 GCACCTCCACGAAGTCTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 26445 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| ||| || ||||| || || ||| |||||| |||||||| || || Sbjct 26446 GAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGG 26505 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| || ||||| | |||| ||||| | ||| Sbjct 26506 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCC 26565 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || | ||| | || ||||| ||||| || || || || || |||||| || Sbjct 26566 ACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGACT 26619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475480953785360