Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1537 149 7e-31 seq1071 122 1e-22 seq1847 116 4e-21 >seq1537 Length=49637 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || |||||||||||||||||||| Sbjct 26424 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 26483 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 26484 GATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 26543 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| ||||| || | ||||| || ||||||||||| || || || Sbjct 26544 GTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCAC 26603 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 26604 GAAGATTTGCAT 26615 >seq1071 Length=16463 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||| |||||||| | || || | ||||||||| ||||| Sbjct 1557 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1616 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 1617 AATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACATT 1676 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| || || |||| |||||||| ||||| ||||| || || || Sbjct 1677 GTCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGAC 1736 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 1737 GAAAATCTGCAT 1748 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| ||||| |||||| ||||| ||||| || || | ||| || | || ||| Sbjct 1084 ACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCATCCTCG 1143 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||||||||| | || | || |||||| || Sbjct 1144 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGA 1203 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | || || ||| || || |||| ||| || || || Sbjct 1204 ATCTTGGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTT 1263 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 1264 CCGGTGAGAGTCTTGACGAAGATTTGCAT 1292 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||| ||| |||||| || || ||||| ||||| | ||||| | Sbjct 1305 ACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCC 1364 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || |||| |||||||||||| | || | | |||||| Sbjct 1365 ATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTT 1424 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||||| ||| | ||| | | | || ||| |||||||| || | ||||| Sbjct 1425 ATCCTGGATCTTCGACTTCA-CGTTGTCAATGGTATCGGATGATTCCACCTCAAGCGTGA 1483 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || ||||| || || || || || || ||||| Sbjct 1484 TCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 104 bits (114), Expect = 3e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 |||| ||| || | | ||| | ||||| || | || |||||||| ||||| |||||| Sbjct 832 TATTGGCCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAG 891 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 ||| || || | | | || ||||||||||| |||||||| |||| |||||||||||| Sbjct 892 TCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCC 951 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGA 46539 | || | | |||||| ||| ||||| ||| | ||| | | | ||||| || Sbjct 952 GGTGGGATACCCTCCTTATCCTGAATCTTTGACTT-AACGTTGTCAATGGTGTCTGAAGA 1010 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | || ||||| || || |||| || || ||||| || ||||| Sbjct 1011 CTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || ||||| |||||||| Sbjct 1785 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAA 1844 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || |||||||| | || | | ||||||||| |||||| |||| | | Sbjct 1845 GATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGCTCTTAACATT 1904 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | || ||| || || || || | |||||||| ||||| || Sbjct 1905 GTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 1952 >seq1847 Length=30800 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| |||||||| | || || ||||||||||| || || | Sbjct 17777 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGA 17718 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | | |||||||||| ||||||| ||||| | Sbjct 17717 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 17658 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || ||| || || || || | |||||||| |||||||||| || || || | Sbjct 17657 CGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGA 17598 Query 46584 AG 46585 || Sbjct 17597 AG 17596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565214808362280