Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq309 349 4e-91 seq726 113 6e-20 seq1849 96.9 4e-15 >seq309 Length=11567 Score = 349 bits (386), Expect = 4e-91 Identities = 758/1127 (67%), Gaps = 12/1127 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 ||||| || ||||| | ||| |||||||| || |||||||| ||||| || | || || Sbjct 2765 ATGGCCGCCTGGACAGCCGCGCCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTG 2706 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || | | | | || ||| | ||||| || || || Sbjct 2705 GGCTCCTTGCCGTTGAAGTAGTCGGTGATGAGCTTCTGGATTCTTGGGATACGGGTGGAA 2646 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||| | ||||| || | || || | || |||| ||| | |||| || Sbjct 2645 CCTCCGACGAGGACGATCTCGTGGACCTTGGTCTTGTCGAGCTTGGCGTCTGCGAGGACA 2586 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | | | |||||| | |||| ||||| |||||||| || ||| Sbjct 2585 CGGTCGACGGGCTGGAGAGTGGAACGGAAGAGGTCCTGGCACAGCTCCTCAAAGCGGGCA 2526 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| || || || |||||||||| || ||| | | || || || || |||| || Sbjct 2525 CGGGTGATAGAGGTGTAGAAATCAATACCCTCGAAGAGAGAGTCGATCTCGATGGAGGTC 2466 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 ||||| | || || | || ||||| || ||||| || || || || | |||||| ||| Sbjct 2465 TGTGCAGAGGACGAAAGAGTGCGCTTGGCACGCTCGCATGCTGTGCGGAGACGACGGAGG 2406 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 ||||| | || || | || ||||| || || | || ||||| | |||||| Sbjct 2405 GCACGGGCATTGGAAGAGAGGTCCTTCTTGTGCTTTCTCTTGAACTCGTTGACGAAGTGG 2346 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | || | ||||| || |||||||||||||| || || || || || | ||| Sbjct 2345 TTGACCAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTGGACTTG 2286 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || |||||||| | || ||| | | | || ||||| || || |||||||| || Sbjct 2285 ACCTCGAAGATACCCTCCTCGATGGTGAGGAGAGAGACATCGAAAGTTCCACCACCAAGA 2226 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| ||||| || | || ||||| ||||||||||| || || || Sbjct 2225 TCGAAGATGAGAACGTTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAAGCAATGGCA 2166 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || ||||| || ||| || || || || | ||||| Sbjct 2165 GCAGCGGTAGGCTCGTTGATGATACGGAGGACGTTGAGTCCGGCGATCAGACCAGCATCC 2106 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || || || || || || || ||||| ||||| || ||||| || || || |||| || Sbjct 2105 TTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTAAGCGGGGACGGTGACAACAGCGTTGTTG 2046 Query 7742 AC-TTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 || ||| | ||||| || | || ||| | || ||| ||| || | ||| || || Sbjct 2045 ACGGTTCCT-CCGAGGTAAGCCTCAGCGGTCTCACGCATCTTGACGAGGATCATGGAGGA 1987 Query 7801 AATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTT--CAATCATGGGT 7858 ||||| || | | || | || || || || || || || || | ||| | ||| | Sbjct 1986 GATCTCCTCGGGTGTGAAGTCCTTGGTCTCGCCCTTGAACTCGACCTGGCAAAC-TGGCT 1928 Query 7859 TTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT 7918 | ||| | | | ||| | ||| | | | | ||||| ||| | ||||||| Sbjct 1927 T--TCCTC--CCTTGTCGATGATCTTGAATGGGAAGTGCTTCATGTCGGCCTGGACCTCA 1872 Query 7919 TGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC 7978 ||| | ||||| | ||||| |||||||| || || || || ||||| | |||||| Sbjct 1871 GCGTCGGCGAACTTGCGACCGATCAGACGCTTGGCGTCGAAGACGGTGTTGCTTGGGTTC 1812 Query 7979 ATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCG 8038 ||||| ||||||||| || || || ||||| ||||| || | || || || || Sbjct 1811 ATGGCGACTTGGTTCTTGGCGGCATCACCGATCAGACGCTC---GGTGTCAGTGAAGGCA 1755 Query 8039 ACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTT 8098 ||| |||||||||| || || || || |||||||| ||||| || || | |||||| | | Sbjct 1754 ACGAACGATGGGGTTGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCAATGCGGTCATCT 1695 Query 8099 TGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||| || |||||||| || || || || ||||| |||||||| Sbjct 1694 CTGAAGATACCCACGCACGAGTAGGTGGTACCCAAATCGATACCGAT 1648 >seq726 Length=46228 Score = 113 bits (124), Expect = 6e-20 Identities = 223/327 (68%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| | || || || || Sbjct 9900 TCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGAAAGAACCTCGAAAGCGCCA 9959 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | || ||||| || || || ||||| || || | || | | Sbjct 9960 CGGTCAATGGACAGGAGAGACACATCGAAGGTTCCTCCACCAAGATCGTA---GACAATG 10016 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || || | | | ||||||| |||||||| |||| || || || ||||| || Sbjct 10017 ATC-TGGCGCTCACCATCGGTCTTATCAAGACCGTAGGCGAGGGCGGCGGCGGTTGGCTC 10075 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| || || ||| || || ||||| | | || || || || || |||| Sbjct 10076 GTTGACAATGCGGAGGACGTTAAGTCCGGCAATGATACCAGCGTCCTTGGTGGCCTGTCT 10135 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || ||||| |||| || || ||||||||||| Sbjct 10136 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGGGTAACCTTCTTACCGAG 10195 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || || || |||| || ||||| || Sbjct 10196 GTAAGACTCAGCGACCTCCTTCATCTT 10222 >seq1849 Length=11387 Score = 96.9 bits (106), Expect = 4e-15 Identities = 199/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||| | || || || || | ||| Sbjct 3968 ATCGAAATCCTCACCACCCAAGTGAGTGTCACCGTTGGTGGACTTAACCTCGAAAACACC 3909 Query 7516 TCCTTCAATGTTTA-ACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||| | | | |||| | | ||| || || || |||||||| || | | Sbjct 3908 --CTTCTGGATCTCGAGAACGGAGATATCGAAGGTTCCTCCACCCAGATCGTAGACAGCG 3851 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | | | || || || ||| || |||||||| || | ||| || || || || Sbjct 3850 ATGATTCTGTCCTCCTC------CTTCTCCAGACCGTAAGCAAGAGCAGCGGCGGTAGGC 3797 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 || |||| | ||| ||| ||||||||||||||| ||| | ||||| || || |||| Sbjct 3796 TCGTTAACGACACGGAGAACGTTCAGGCCAGCAAT--TTGACCGGCATCCTTGGTGGCTT 3739 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA 7742 | || || || ||||| ||||| || ||||| || || || |||| | ||| Sbjct 3738 GGCGCTGGGAGTCGTTGAAGTAAGCTGGGACGGTAACAACGGCGTTCTTGA 3688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635106291144760