Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1537 109 4e-19 seq1847 84.2 1e-11 >seq1537 Length=49637 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| |||||||||| ||| || ||||| ||||| |||||||||||| | || || Sbjct 26401 CTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 26460 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| || ||||| || || || || |||||||| | || | ||||||||| Sbjct 26461 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 26520 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGT 34942 || ||||| ||||| || | ||||| || | ||| || || | ||| Sbjct 26521 TCCTGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGACGACTCCACCTCAAGGGT 26576 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || |||||||| ||||| ||||| Sbjct 26577 GATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 26615 >seq1847 Length=30800 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/196 (70%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| ||||| | ||| |||| || ||||| || || ||||| || Sbjct 17775 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 17716 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| |||||| ||||| || | Sbjct 17715 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT--T 17660 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || ||| || || | ||| ||||| || ||||| | ||||| || Sbjct 17659 GTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGAC 17600 Query 34970 AAAGATCTGCATATTC 34985 ||| ||| | |||| Sbjct 17599 GAAG--CTGTAGATTC 17586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324620389339992