Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1479 143 8e-29 seq1441 116 1e-20 seq1480 87.8 5e-12 >seq1479 Length=10203 Score = 143 bits (158), Expect = 8e-29 Identities = 578/903 (64%), Gaps = 13/903 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || |||||||| |||||||||||| || |||||| || | ||||||||||| Sbjct 7308 GTACTCGACAATCTCCGTGCACAGGTTAGAGCTGCGGATGGTACCGAGGTTCTTCTGGTT 7249 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| |||||||||||||| | ||| | ||| |||||||||| |||| | Sbjct 7248 GCTCTTGCGGTTGCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGA 7189 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCT-TCCG 155808 || ||||| ||| || | |||| || || |||| | || | | |||| Sbjct 7188 CTCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATGGTCTTG-CGACCCTTCTTCTCCG 7130 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 |||| |||||| || || | | | || ||||||||| || || |||||||| Sbjct 7129 ACTCGTATTTCTCGTAGAGAGCCTCGAACTCATCACCGTAAACGTCCGCCAATCCAGGGC 7070 Query 155869 ACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATA 155925 | | | |||||| | || | ||| | || || | ||||||| ||| || | Sbjct 7069 ATTCGTTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTC---AACACGCTTCATGAAGA 7013 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984 ||| ||| | ||| ||||| | ||| | | | ||| ||||| | |||||| Sbjct 7012 GATCCGGGATCCAGAGAGCGTAGAACAAGTCAC-GGGCACGGACTTCCTCCTTGCCGTGG 6954 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||||| | || ||||| || | ||||| || |||||| | ||| || || Sbjct 6953 TTCTTCCTCAAGTCCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACATAGATGGCG 6894 Query 156045 AAACTACCA---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || |||| | | ||||||||||| || || || | ||||| || |||||||| Sbjct 6893 AAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 6834 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||| |||| ||||| || || | || ||||| ||| ||| | | ||| | Sbjct 6833 CGGAGCATGGGAACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTG 6774 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | || | | ||| || | | ||| ||||| || | || || || || ||| Sbjct 6773 GCACGGATACGATGGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACAT 6714 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281 ||| | || | | ||||| |||||| ||| || | ||| | | |||| Sbjct 6713 GTCTTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAG 6654 Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 || | || | ||||||| ||||| ||||| ||||| || | || || | || Sbjct 6653 GATGACAGCTGGGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAG 6594 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATA 156401 || || |||||| | ||||||||| | |||||||| || |||||||| Sbjct 6593 TATTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAATG 6534 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGC 156461 | | | || | ||| ||| ||||| || | || ||| ||||||| || Sbjct 6533 CCAACCGCCACACGCATAATCATGTGCTGTGGCCTTTCAGCAACGTTGCCATCAAGGCGG 6474 Query 156462 AGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTG 156521 |||||||||| || || || || || || || || || | | |||||||||| | Sbjct 6473 AGAAGGTATGAACGCTCAAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCACGGTCG 6414 Query 156522 TAA 156524 ||| Sbjct 6413 TAA 6411 >seq1441 Length=55341 Score = 116 bits (128), Expect = 1e-20 Identities = 198/286 (69%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | |||||||||||| ||||||||| | || || ||||| |||||||| ||| Sbjct 7290 TTGACGAGACGACGCTGAATGTAACCAGTTTCGGCAGTCTTGACAGCAGTATCAATAAGA 7231 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT---AGCCCCCCAATA 302700 || |||||||| ||||||| ||||| || | ||||| | || ||||| | | Sbjct 7230 CCCTCACGACCAGCCATAGCGTGGAAAAAGA---ATTCCGATGGTGTAAGCCCTCTCAGG 7174 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 | ||| | ||||| || ||||| | |||||| || | || ||| || || || ||| Sbjct 7173 TACGAGTTTTCAACAAAGCCACGAGACTCGGGAGAGTAATCATCCTTTGTGAAATGCGGC 7114 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 ||||| | || || | ||| | || |||||||| || || || ||| || || | Sbjct 7113 AGGGTGCGGTACTTGAACCCGAAGGGAATACGCTTACCCTCCACAGACTGTTGCCCGACA 7054 Query 302821 CACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 || | ||||||| || ||||| | | |||||||| |||| Sbjct 7053 AGCGCAGTCATCTGGGAGATATTGATAGTGGAACCCTTGGATCCAG 7008 Score = 98.7 bits (108), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| |||| ||||| ||| |||| ||||||||| Sbjct 8082 AGAATTTCCTTCAGACGCGGCACACCAAGGGTGACGTT---CTTTGACGACACACCAGCA 8026 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | || || | |||||||||||| || || |||| Sbjct 8025 AAATGGAAAGTATTGAGCGTCATCTGCGTGGCAGGCTCACCAATAGACTGGGCGGCAAGA 7966 Query 301933 ATACCAACCATTTCTCCTGG 301952 ||||||||||| || || || Sbjct 7965 ATACCAACCATCTCACCAGG 7946 >seq1480 Length=20701 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || ||||| |||||||||| ||| || | Sbjct 6731 TGAGCAATCGTCATACGAGAAGGAATGGCGTGGGGGTTGATGATGAGGTCAGGCACAATA 6672 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || |||||| |||||||| | || | || || | ||||| ||||| ||||| Sbjct 6671 CCCTCGCGAGTGAAAGGCATATCTTCTTGG-CGGTAGGTGATACCAATGGTTCCTTTTTG 6613 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||| |||||| |||||| |||||||| Sbjct 6612 TCCGTGGCGAGAAGCGAACTTGTCACCAAT 6583 Score = 84.2 bits (92), Expect = 6e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||| ||||| ||||||||||||||||| ||||| || |||||||| || |||||||| | Sbjct 7086 TGCGCCGTGGGAAATCATACAATCACGTTCCATCTCTCCGAAACGCAGTCCACCATCTCT 7027 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | |||||| | || || | || ||| | | || || ||| | | || Sbjct 7026 CGCACGACCCTCCACTGGTTGCCTCGTCAGAATTTGAGTTGGTCCTCTGGCTCTGGCGTG 6967 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||| || | |||||||| | ||||||||||| ||| |||||| | ||| Sbjct 6966 GATCTTGTCGTCGACCATATGTCTCAGACGCTGGTAATATGTGGGACCCAAGAA 6913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471754634263243